TreeSAPP: the Tree-based Sensitive and Accurate Phylogenetic Profiler. - Connor Morgan-Lang; Ryan J. McLaughlin; Zachary Armstrong; Grace Zhang; Kevin Chan; Steven J. Hallam (Bioinform., 2020)

Metabolic pathway inference using multi-label classification with rich pathway features. - Abdur Rahman Mohd Abul Basher; Ryan J. McLaughlin; Steven J. Hallam (PLoS Comput. Biol., 2020)

Metabolic Pathway Prediction Using Non-Negative Matrix Factorization with Improved Precision. - Abdur Rahman Mohd Abul Basher; Ryan J. McLaughlin; Steven J. Hallam (J. Comput. Biol., 2021)