Python Unleashed on Systems Biology. - Christopher R. Myers; Ryan N. Gutenkunst; James P. Sethna (Comput. Sci. Eng., 2007)

Universally Sloppy Parameter Sensitivities in Systems Biology Models. - Ryan N. Gutenkunst; Joshua J. Waterfall; Fergal P. Casey; Kevin S. Brown 001; Christopher R. Myers; James P. Sethna (PLoS Comput. Biol., 2007)

RuleMonkey: software for stochastic simulation of rule-based models. - Joshua Colvin; Michael I. Monine; Ryan N. Gutenkunst; William S. Hlavacek; Daniel D. Von Hoff; Richard G. Posner (BMC Bioinform., 2010)

Effect of 1918 PB1-F2 Expression on Influenza A Virus Infection Kinetics. - Amber M. Smith; Frederick R. Adler; Julie L. McAuley; Ryan N. Gutenkunst; Ruy M. Ribeiro; Jonathan A. McCullers; Alan S. Perelson (PLoS Comput. Biol., 2011)

Effect of Dedifferentiation on Time to Mutation Acquisition in Stem Cell-Driven Cancers. - Alexandra Jilkine; Ryan N. Gutenkunst (PLoS Comput. Biol., 2014)

Sensitive and specific post-call filtering of genetic variants in xenograft and primary tumors. - Brian K. Mannakee; Uthra Balaji; Agnieszka K. Witkiewicz; Ryan N. Gutenkunst; Erik S. Knudsen (Bioinform., 2018)