On the Concept of Cis-regulatory Information: From Sequence Motifs to Logic Functions. - Ryan Tarpine; Sorin Istrail (Algorithmic Bioprocesses, 2009)

The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. - Bjarni V. Halldórsson; Derek Aguiar; Ryan Tarpine; Sorin Istrail (RECOMB, 2010)

The Imperfect Ancestral Recombination Graph Reconstruction Problem: Upper Bounds for Recombination and Homoplasy. - Fumei Lam; Ryan Tarpine; Sorin Istrail (J. Comput. Biol., 2010)

Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection. - Ryan Tarpine; Fumei Lam; Sorin Istrail (RECOMB, 2011)

The Clark Phaseable Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. - Bjarni V. Halldórsson; Derek Aguiar; Ryan Tarpine; Sorin Istrail (J. Comput. Biol., 2011)

OCR-Based Image Features for Biomedical Image and Article Classification: Identifying Documents Relevant to Genomic Cis-Regulatory Elements. - Hagit Shatkay; Ramya Narayanaswamy; Santosh S. Nagaral; Na Harrington; M. V. Rohith; Gowri Somanath; Ryan Tarpine; Kyle Schutter; Tim Johnstone; Dorothea Blostein; Sorin Istrail; Chandra Kambhamettu (AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text, 2012)

OCR-based image features for biomedical image and article classification: identifying documents relevant to cis-regulatory elements. - Hagit Shatkay; Ramya Narayanaswamy; Santosh S. Nagaral; Na Harrington; M. V. Rohith; Gowri Somanath; Ryan Tarpine; Kyle Schutter; Tim Johnstone; Dorothea Blostein; Sorin Istrail; Chandra Kambhamettu (BCB, 2012)

A database of causality-inferred structure-function information for genomic cis-regulatory architecture. - Ryan Tarpine (2012)

Utilizing image-based features in biomedical document classification. - Kaidi Ma; Hogyeong Jeong; M. V. Rohith; Gowri Somanath; Ryan Tarpine; Kyle Schutter; Dorothea Blostein; Sorin Istrail; Chandra Kambhamettu; Hagit Shatkay (ICIP, 2015)