Lossless Compression of Chemical Fingerprints Using Integer Entropy Codes Improves Storage and Retrieval. - Pierre Baldi; Ryan W. Benz; Daniel S. Hirschberg; S. Joshua Swamidass (J. Chem. Inf. Model., 2007)

BLASTing small molecules - statistics and extreme statistics of chemical similarity scores. - Pierre Baldi; Ryan W. Benz (ISMB, 2008)

Discovery of Power-Laws in Chemical Space. - Ryan W. Benz; S. Joshua Swamidass; Pierre Baldi (J. Chem. Inf. Model., 2008)

Computational Prediction and Experimental Verification of New MAP Kinase Docking Sites and Substrates Including Gli Transcription Factors. - Thomas C. Whisenant; David T. Ho; Ryan W. Benz; Jeffrey S. Rogers; Robyn M. Kaake; Elizabeth A. Gordon; Lan Huang; Pierre Baldi; Lee Bardwell (PLoS Comput. Biol., 2010)

Data-Driven High-Throughput Prediction of the 3-D Structure of Small Molecules: Review and Progress. - Alessio Andronico; Arlo Z. Randall; Ryan W. Benz; Pierre Baldi (J. Chem. Inf. Model., 2011)