NWPerf: a system wide performance monitoring tool for large Linux clusters. - Ryan W. Mooney; Ken P. Schmidt; R. Scott Studham (CLUSTER, 2004)

Peptide identification via constrained multi-objective optimization: Pareto-based genetic algorithms. - Joël M. Malard; Alejandro Heredia-Langner; William R. Cannon; Ryan W. Mooney; Douglas J. Baxter (Concurr. Comput. Pract. Exp., 2005)

Bandwidth challenge - High throughput feature-matching analysis of biological spectral data. - Christopher S. Oehmen; Douglas J. Baxter; Ryan W. Mooney; Shaun O'Leary; Tim Carlson (SC, 2006)

Unstructured data analysis of streaming video using parallel, high-throughput algorithms. - Harold Trease; Tim Carlson; Ryan W. Mooney; Robert M. Farber; Lynn Trease (SIP, 2007)