AggBERT: Best in Class Prediction of Hexapeptide Amyloidogenesis with a Semi-Supervised ProtBERT Model. - Ryann Perez; Xinning Li; Sam Giannakoulias; E. James Petersson (J. Chem. Inf. Model., 2023)

Large Language Models for Education: ChemTAsk - An Open-Source Paradigm for Automated Q&A in the Graduate Classroom. - Ryann Perez; Marie Shimogawa; Yanan Chang; Hoang Anh T. Phan; Jason G. Marmorstein; Evan S. K. Yanagawa; E. James Petersson (CoRR, 2025)