An integrative network-based approach to identify novel disease genes and pathways: a case study in the context of inflammatory bowel disease. - Ryohei Eguchi; Mohammad Bozlul Karim; Pingzhao Hu; Tetsuo Sato; Naoaki Ono; Shigehiko Kanaya; Md. Altaf-Ul-Amin (BMC Bioinform., 2018)

Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks. - Ryohei Eguchi; Naoaki Ono; Aki Hirai; Tetsuo Katsuragi; Satoshi Nakamura 001; Ming Huang 002; Md. Altaf-Ul-Amin; Shigehiko Kanaya (BMC Bioinform., 2019)

TRANSDIRE: data-driven direct reprogramming by a pioneer factor-guided trans-omics approach. - Ryohei Eguchi; Momoko Hamano; Michio Iwata; Toru Nakamura; Shinya Oki; Yoshihiro Yamanishi (Bioinform., 2022)

Small compound-based direct cell conversion with combinatorial optimization of pathway regulations. - Toru Nakamura; Michio Iwata; Momoko Hamano; Ryohei Eguchi; Jun-ichi Takeshita; Yoshihiro Yamanishi (Bioinform., 2022)