A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: Toward the strict alignment of valid fragments across electrophoretic patterns. - Koji Kadota; Ryutaro Fukumura; Joseph J. Rodrigue; Ryoko Araki; Masumi Abe (BMC Bioinform., 2005)

GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data. - Koji Kadota; Ryoko Araki; Yuji Nakai; Masumi Abe (Algorithms Mol. Biol., 2007)

RY4GIT/perceptual-models: v1.2: McMillan et al., 2025 release. - Hilary K. McMillan; Ryoko Araki; Lauren Bolotin; Dong-Hyun Kim; Gemma Coxon; Martyn Clark; Jan Seibert (Zenodo, 2025)