SAHG, a comprehensive database of predicted structures of all human proteins. - Chie Motono; Junichi Nakata; Ryotaro Koike; Kana Shimizu; Matsuyuki Shirota; Takayuki Amemiya; Kentaro Tomii; Nozomi Nagano; Naofumi Sakaya; Kiyotaka Misoo; Miwa Sato; Akinori Kidera; et al. (Nucleic Acids Res., 2011)

SCPC: a method to structurally compare protein complexes. - Ryotaro Koike; Motonori Ota (Bioinform., 2012)

PSCDB: a database for protein structural change upon ligand binding. - Takayuki Amemiya; Ryotaro Koike; Akinori Kidera; Motonori Ota (Nucleic Acids Res., 2012)

IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature. - Satoshi Fukuchi; Shigetaka Sakamoto; Yukiko Nobe; Seiko D. Murakami; Takayuki Amemiya; Kazuo Hosoda; Ryotaro Koike; Hidekazu Hiroaki; Motonori Ota (Nucleic Acids Res., 2012)

IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners. - Satoshi Fukuchi; Takayuki Amemiya; Shigetaka Sakamoto; Yukiko Nobe; Kazuo Hosoda; Yumiko Kado; Seiko D. Murakami; Ryotaro Koike; Hidekazu Hiroaki; Motonori Ota (Nucleic Acids Res., 2014)

Heuristic Contention-Free Scheduling Algorithm for Multi-core Processor using LET Model. - Shingo Igarashi; Tasuku Ishigooka; Tatsuya Horiguchi; Ryotaro Koike; Takuya Azumi (DS-RT, 2020)

Contention-Free Scheduling for Clustered Many-Core Platform. - Ryotaro Koike; Takuro Fukunaga; Shingo Igarashi; Takuya Azumi (ICESS, 2020)

Federated Scheduling in Clustered Many-core Processors. - Ryotaro Koike; Takuya Azumi (DS-RT, 2021)

Dedicated Processor Allocation Scheduling for High-load Tasks on Clustered Many-core Processors. - Yutaro Nozaki; Ryo Okamura; Ryotaro Koike; Takuya Azumi (J. Inf. Process., 2025)