Spatial Distribution Functions As a Tool in the Analysis of Ribonucleic Acids Hydration - Molecular Dynamics Studies. - Katarzyna Kulinska; Tadeusz Kulinski; Alexander Lyubartsev 001; Aatto Laaksonen; Ryszard W. Adamiak (Comput. Chem., 2000)

General Conception of the Virtual Laboratory. - Marcin Lawenda; Norbert Meyer; Tomasz Rajtar; Marcin Okon; Dominik Stoklosa; Maciej Stroinski; Lukasz Popenda; Zofia Gdaniec; Ryszard W. Adamiak (International Conference on Computational Science, 2004)

An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes. - Ryszard W. Adamiak; Jacek Blazewicz; Piotr Formanowicz; Zofia Gdaniec; Marta Kasprzak; Mariusz Popenda; Marta Szachniuk (J. Comput. Biol., 2004)

NMR Analysis of RNA Bulged structures: Tabu Search Application in NOE Signal Assignment. - Marta Szachniuk; Lukasz Popenda; Zofia Gdaniec; Ryszard W. Adamiak; Jacek Blazewicz (CIBCB, 2005)

RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures. - Mariusz Popenda; Marek Blazewicz; Marta Szachniuk; Ryszard W. Adamiak (Nucleic Acids Res., 2008)

An assignment walk through 3D NMR spectrum. - Marta Szachniuk; Mariusz Popenda; Ryszard W. Adamiak; Jacek Blazewicz (CIBCB, 2009)

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures. - Mariusz Popenda; Marta Szachniuk; Marek Blazewicz; Szymon Wasik; Edmund K. Burke; Jacek Blazewicz; Ryszard W. Adamiak (BMC Bioinform., 2010)

RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs. - Maciej Antczak; Tomasz Zok; Mariusz Popenda; Piotr Lukasiak; Ryszard W. Adamiak; Jacek Blazewicz; Marta Szachniuk (Nucleic Acids Res., 2014)

New in silico approach to assessing RNA secondary structures with non-canonical base pairs. - Agnieszka Rybarczyk; Natalia Szostak; Maciej Antczak; Tomasz Zok; Mariusz Popenda; Ryszard W. Adamiak; Jacek Blazewicz; Marta Szachniuk (BMC Bioinform., 2015)

RNAssess - a web server for quality assessment of RNA 3D structures. - Piotr Lukasiak; Maciej Antczak; Tomasz Ratajczak; Marta Szachniuk; Mariusz Popenda; Ryszard W. Adamiak; Jacek Blazewicz (Nucleic Acids Res., 2015)

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation. - Maciej Antczak; Mariusz Popenda; Tomasz Zok; Michal Zurkowski; Ryszard W. Adamiak; Marta Szachniuk (Bioinform., 2018)

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures. - Maciej Antczak; Tomasz Zok; Maciej Osowiecki; Mariusz Popenda; Ryszard W. Adamiak; Marta Szachniuk (BMC Bioinform., 2018)

RNApdbee 2.0: multifunctional tool for RNA structure annotation. - Tomasz Zok; Maciej Antczak; Michal Zurkowski; Mariusz Popenda; Jacek Blazewicz; Ryszard W. Adamiak; Marta Szachniuk (Nucleic Acids Res., 2018)