Spatiotemporal Simulation of a Single Living Cell. - Yoshiki Yamaguchi; Tsutomu Maruyama; Ryuzo Azuma; Akihiko Konagaya (FPT, 2005)

Particle Simulation Approach for Sub-cellular Dynamics and Interactions of Biological Molecules. - Ryuzo Azuma; Tetsuji Kitagawa; Hiroshi Kobayashi; Akihiko Konagaya (IMSCCS (1), 2006)

Particle simulation approach for subcellular dynamics and interactions of biological molecules. - Ryuzo Azuma; Tetsuji Kitagawa; Hiroshi Kobayashi; Akihiko Konagaya (BMC Bioinform., 2006)

Seeing Is Knowing: Visualization of Parameter-Parameter Dependencies in Biomedical Network Models. - Akihiko Konagaya; Ryuzo Azuma; Ryo Umetsu; Shingo Ohki; Fumikazu Konishi; Kazumi Matsumura; Sumi Yoshikawa (Grid Computing for Bioinformatics and Computational Biology, 2007)

Kinetic Analysis of Ligand-Receptor Complex Formation with the Aid of Computer Simulation. - Hiroshi Kobayashi; Ryuzo Azuma; Akihiko Konagaya (AINA Workshops (1), 2007)

Discovering Dynamic Characteristics of Biochemical Pathways using Geometric Patterns among Parameter-Parameter Dependencies in Differential Equations. - Ryuzo Azuma; Ryo Umetsu; Shingo Ohki; Fumikazu Konishi; Sumi Yoshikawa; Akihiko Konagaya; Kazumi Matsumura (New Gener. Comput., 2007)

Mesoscopic-level Simulation of Dynamics and Interactions of Biological Molecules Using Monte Carlo Simulation. - Yoshiki Yamaguchi; Tsutomu Maruyama; Ryuzo Azuma; Moritoshi Yasunaga; Akihiko Konagaya (J. VLSI Signal Process., 2007)

Drug interaction prediction using ontology-driven hypothetical assertion framework for pathway generation followed by numerical simulation. - Takeshi Arikuma; Sumi Yoshikawa; Ryuzo Azuma; Kentaro Watanabe; Kazumi Matsumura; Akihiko Konagaya (BMC Bioinform., 2008)