Conformational search of peptides and proteins: Monte Carlo minimization with an adaptive bias method applied to the heptapeptide deltorphin. - S. Banu Ozkan; Hagai Meirovitch (J. Comput. Chem., 2004)

Change in Allosteric Network Affects Binding Affinities of PDZ Domains: Analysis through Perturbation Response Scanning. - Z. Nevin Gerek; S. Banu Ozkan (PLoS Comput. Biol., 2011)

Collective Dynamics Differentiates Functional Divergence in Protein Evolution. - Tyler J. Glembo; Daniel W. Farrell; Z. Nevin Gerek; M. F. Thorpe; S. Banu Ozkan (PLoS Comput. Biol., 2012)

BP-Dock: A Flexible Docking Scheme for Exploring Protein-Ligand Interactions Based on Unbound Structures. - Ashini Bolia; Z. Nevin Gerek; S. Banu Ozkan (J. Chem. Inf. Model., 2014)

Adaptive BP-Dock: An Induced Fit Docking Approach for Full Receptor Flexibility. - Ashini Bolia; S. Banu Ozkan (J. Chem. Inf. Model., 2016)

Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs. - Brandon M. Butler; I. Can Kazan; Avishek Kumar; S. Banu Ozkan (PLoS Comput. Biol., 2018)

Allostery and Epistasis: Emergent Properties of Anisotropic Networks. - Paul Campitelli; S. Banu Ozkan (Entropy, 2020)

Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants. - Nicholas J. Ose; Brandon M. Butler; Avishek Kumar; I. Can Kazan; Maxwell D. Sanderford; Sudhir Kumar 001; S. Banu Ozkan (PLoS Comput. Biol., 2022)

Mamba time series forecasting with uncertainty propagation. - Pedro Pessoa; Paul Campitelli; Douglas Shepherd; S. Banu Ozkan; Steve Pressé (CoRR, 2025)