PredSTP: a highly accurate SVM based model to predict sequential cystine stabilized peptides. - S. M. Ashiqul Islam; Tanvir Sajed; Christopher Kearney; Erich J. Baker (BMC Bioinform., 2015)

Protein Classification using Modified N-Gram and Skip-Gram Models: Extended Abstract. - S. M. Ashiqul Islam; Christopher Michel Kearney; Ankan Choudhury; Erich J. Baker (BCB, 2017)

CSPred: A machine-learning-based compound model to identify the functional activities of biologically-stable toxins. - S. M. Ashiqul Islam; Christopher Michel Kearney; Erich J. Baker (BIBM, 2017)

Protein classification using modified n-grams and skip-grams. - S. M. Ashiqul Islam; Benjamin J. Heil; Christopher Michel Kearney; Erich J. Baker (Bioinform., 2018)

Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment. - Marcos Díaz-Gay; Raviteja Vangara; Mark Barnes; Xi Wang; S. M. Ashiqul Islam; Ian Vermes; Stephen Duke; Nithish Bharadhwaj Narasimman; Ting Yang; Zichen Jiang; Sarah J. Moody; Sergey Senkin; et al. (Bioinform., 2023)