Optimal design of gene knockout experiments for gene regulatory network inference. - S. M. Minhaz Ud-Dean; Rudiyanto Gunawan (Bioinform., 2016)

TRaCE+: Ensemble inference of gene regulatory networks from transcriptional expression profiles of gene knock-out experiments. - S. M. Minhaz Ud-Dean; Sandra Heise; Steffen Klamt; Rudiyanto Gunawan (BMC Bioinform., 2016)

SINCERITIES: inferring gene regulatory networks from time-stamped single cell transcriptional expression profiles. - Nan Papili Gao; S. M. Minhaz Ud-Dean; Olivier Gandrillon; Rudiyanto Gunawan (Bioinform., 2018)