NeBcon: protein contact map prediction using neural network training coupled with naïve Bayes classifiers. - Baoji He; S. M. Mortuza; Yanting Wang; Hong-Bin Shen; Yang Zhang 040 (Bioinform., 2017)

Detecting distant-homology protein structures by aligning deep neural-network based contact maps. - Wei Zheng 013; Qiqige Wuyun; Yang Li 107; S. M. Mortuza; Chengxin Zhang; Robin Pearce; Jishou Ruan; Yang Zhang 040 (PLoS Comput. Biol., 2019)

DeepMSA: constructing deep multiple sequence alignment to improve contact prediction and fold-recognition for distant-homology proteins. - Chengxin Zhang; Wei Zheng 013; S. M. Mortuza; Yang Li 107; Yang Zhang 040 (Bioinform., 2020)