mi-IsoNet: systems-scale microRNA landscape reveals rampant isoform-mediated gain of target interaction diversity and signaling specificity. - Li Guo; Yongsheng Li; Kara M. Cirillo; Robert A. Marick; Zhe Su; Xing Yin; Xu Hua; Gordon B. Mills; Nidhi Sahni; S. Stephen Yi (Briefings Bioinform., 2021)

AD-Syn-Net: systematic identification of Alzheimer's disease-associated mutation and co-mutation vulnerabilities via deep learning. - Xingxin Pan; Zeynep H. Coban Akdemir; Ruixuan Gao; Xiaoqian Jiang; Gloria M. Sheynkman; Erxi Wu; Jason H. Huang; Nidhi Sahni; S. Stephen Yi (Briefings Bioinform., 2023)

Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. - Daniel Osório 004; Anna Capasso; S. Gail Eckhardt; Uma Giri; Alexander Somma; Todd M. Pitts; Christopher H. Lieu; Wells A. Messersmith; Stacey M. Bagby; Harinder Singh; Jishnu Das; Nidhi Sahni; et al. (Nat. Comput. Sci., 2024)