Energy-based classification and structure prediction of transmembrane beta-barrel proteins. - T. Van Du Tran; Philippe Chassignet; Saad Sheikh; Jean-Marc Steyaert (ICCABS, 2011)

Impact of the Energy Model on the Complexity of RNA Folding with Pseudoknots. - Saad Sheikh; Rolf Backofen; Yann Ponty (CPM, 2012)

Abstract: Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches. - Evan Senter; Saad Sheikh; Iván Dotú; Yann Ponty; Peter Clote (RECOMB, 2013)