Detection of latent sequence periodicities. - Elisabetta Pizzi; Sabino Liuni; Clara Frontali (Nucleic Acids Res., 1990)

A simple method for global sequence comparison. - Elisabetta Pizzi; Marcella Attimonelli; Sabino Liuni; Clara Frontali; Cecilia Saccone (Nucleic Acids Res., 1992)

SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences. - Sabino Liuni; N. Prunella; Graziano Pesole; Tiziana D'Orazio; Ettore Stella; Arcangelo Distante (Comput. Appl. Biosci., 1993)

FASTPAT: a fast and efficient algorithm for string searching in DNA sequences. - N. Prunella; Sabino Liuni; Marcella Attimonelli; Graziano Pesole (Comput. Appl. Biosci., 1993)

CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases. - Giorgio Grillo; Marcella Attimonelli; Sabino Liuni; Graziano Pesole (Comput. Appl. Biosci., 1996)

Databases of MRNA Untranslated Regions for Metazoa. - Graziano Pesole; Giorgio Grillo; Sabino Liuni (Comput. Chem., 1996)

UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs. - Graziano Pesole; Sabino Liuni; Giorgio Grillo; Cecilia Saccone (Nucleic Acids Res., 1998)

PLMItRNA, a database for higher plant mitochondrial tRNAs and tRNA genes. - Luigi R. Ceci; Mariateresa Volpicella; Sabino Liuni; Vito Volpetti; Flavio Licciulli; Raffaele Gallerani (Nucleic Acids Res., 1999)

Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences. - Cecilia Lanave; Marcella Attimonelli; Mariateresa De Robertis; Flavio Licciulli; Sabino Liuni; Elisabetta Sbisà; Cecilia Saccone (Nucleic Acids Res., 1999)

UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs. - Graziano Pesole; Sabino Liuni; Giorgio Grillo; Matilde Ippedico; Alessandra Larizza; Wojciech Makalowski; Cecilia Saccone (Nucleic Acids Res., 1999)

The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis. - Graziano Pesole; Giorgio Grillo; Alessandra Larizza; Sabino Liuni (Briefings Bioinform., 2000)

PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance. - Graziano Pesole; Sabino Liuni; Mark D'Souza (Bioinform., 2000)

Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences. - Cecilia Lanave; Sabino Liuni; Flavio Licciulli; Marcella Attimonelli (Nucleic Acids Res., 2000)

MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins. - Graziano Pesole; Carmela Gissi; Domenico Catalano; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Marcella Attimonelli; Cecilia Saccone (Nucleic Acids Res., 2000)

UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. - Graziano Pesole; Sabino Liuni; Giorgio Grillo; Flavio Licciulli; Alessandra Larizza; Wojciech Makalowski; Cecilia Saccone (Nucleic Acids Res., 2000)

PLMItRNA, a database for tRNAs and tRNA genes in plant mitochondria: enlargement and updating. - Vito Volpetti; Raffaele Gallerani; Caterina De Benedetto; Sabino Liuni; Flavio Licciulli; Luigi R. Ceci (Nucleic Acids Res., 2000)

PLMItRNA, a database for mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes. - Fabrizio Damiano; Raffaele Gallerani; Sabino Liuni; Flavio Licciulli; Luigi R. Ceci (Nucleic Acids Res., 2001)

MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002. - Marcella Attimonelli; Domenico Catalano; Carmela Gissi; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Monica Santamaria; Graziano Pesole; Cecilia Saccone (Nucleic Acids Res., 2002)

PLANT-PIs: a database for plant protease inhibitors and their genes. - Francesca De Leo; Mariateresa Volpicella; Flavio Licciulli; Sabino Liuni; Raffaele Gallerani; Luigi R. Ceci (Nucleic Acids Res., 2002)

UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. - Graziano Pesole; Sabino Liuni; Giorgio Grillo; Flavio Licciulli; Flavio Mignone; Carmela Gissi; Cecilia Saccone (Nucleic Acids Res., 2002)

PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. - Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Elisabetta Sbisà; Graziano Pesole (Nucleic Acids Res., 2003)

PLMItRNA, a database on the heterogeneous genetic origin of mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes. - Guglielmo Rainaldi; Mariateresa Volpicella; Flavio Licciulli; Sabino Liuni; Raffaele Gallerani; Luigi R. Ceci (Nucleic Acids Res., 2003)

DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions. - Andreas Gisel; Maria Panetta; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Cecilia Saccone; Graziano Pesole (Bioinform., 2004)

CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. - Tiziana Castrignanò; Alessandro Canali; Giorgio Grillo; Sabino Liuni; Flavio Mignone; Graziano Pesole (Nucleic Acids Res., 2004)

SVM and RLS Models for Cancer Classification. - Nicola Ancona; Annarita D'Addabbo; Sabino Liuni; Graziano Pesole; Rosalia Maglietta (Computational Intelligence, 2005)

Regularized Least Squares Cancer Classifiers from DNA microarray data. - Nicola Ancona; Rosalia Maglietta; Annarita D'Addabbo; Sabino Liuni; Graziano Pesole (BMC Bioinform., 2005)

UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. - Flavio Mignone; Giorgio Grillo; Flavio Licciulli; Michele Iacono; Sabino Liuni; Paul J. Kersey; Jorge Duarte; Cecilia Saccone; Graziano Pesole (Nucleic Acids Res., 2005)

Classification error as a measure of gene relevance in cancer diagnosis. - Rosalia Maglietta; Annarita D'Addabbo; Ada Piepoli; Francesco Perri; Sabino Liuni; Graziano Pesole; Nicola Ancona (IJCNN, 2006)

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags. - Tiziana Castrignanò; Paolo D'Onorio De Meo; Giorgio Grillo; Sabino Liuni; Flavio Mignone; Ivano Giuseppe Talamo; Graziano Pesole (Bioinform., 2006)

On the statistical assessment of classifiers using DNA microarray data. - Nicola Ancona; Rosalia Maglietta; Ada Piepoli; Annarita D'Addabbo; R. Cotugno; M. Savino; Sabino Liuni; Massimo Carella; Graziano Pesole; Francesco Perri (BMC Bioinform., 2006)

Selection of relevant genes in cancer diagnosis based on their prediction accuracy. - Rosalia Maglietta; Annarita D'Addabbo; Ada Piepoli; Francesco Perri; Sabino Liuni; Graziano Pesole; Nicola Ancona (Artif. Intell. Medicine, 2007)

Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data. - Rosalia Maglietta; Ada Piepoli; Domenico Catalano; Piepoli Licciulli; Massimo Carella; Sabino Liuni; Graziano Pesole; Francesco Perri; Nicola Ancona (Bioinform., 2007)

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data. - Elisabetta Sbisà; Domenico Catalano; Giorgio Grillo; Flavio Licciulli; Antonio Turi; Sabino Liuni; Graziano Pesole; Anna De Grassi; Mariano Francesco Caratozzolo; Anna Maria D'Erchia; Beatriz Navarro; Apollonia Tullo; et al. (BMC Bioinform., 2007)

A high performance grid-web service framework for the identification of 'conserved sequence tags'. - Paolo D'Onorio De Meo; Danilo Carrabino; Nico Sanna; Tiziana Castrignanò; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Matteo Re; Flavio Mignone; Graziano Pesole (Future Gener. Comput. Syst., 2007)

HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers. - Paolo D'Onorio De Meo; Danilo Carrabino; Mattia D'Antonio; Annarita D'Addabbo; Sabino Liuni; Flavio Mignone; Graziano Pesole; Nicola Ancona (CCGRID, 2008)

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. - David Stephen Horner; Giulio Pavesi; Tiziana Castrignanò; Paolo D'Onorio De Meo; Sabino Liuni; Michael Sammeth; Ernesto Picardi; Graziano Pesole (Briefings Bioinform., 2010)

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. - Giorgio Grillo; Antonio Turi; Flavio Licciulli; Flavio Mignone; Sabino Liuni; Sandro Banfi; Vincenzo Alessandro Gennarino; David Stephen Horner; Giulio Pavesi; Ernesto Picardi; Graziano Pesole (Nucleic Acids Res., 2010)

Reference databases for taxonomic assignment in metagenomics. - Monica Santamaria; Bruno Fosso; Arianna Consiglio; Giorgio De Caro; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Marinella Marzano; Daniel Alonso-Alemany; Gabriel Valiente; Graziano Pesole (Briefings Bioinform., 2012)

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments. - Arianna Consiglio; Massimo Carella; Giorgio De Caro; Gianfranco Delle Foglie; Candida Giovannelli; Giorgio Grillo; Massimo Ianigro; Flavio Licciulli; Orazio Palumbo; Ada Piepoli; Elena Ranieri; Sabino Liuni (BMC Bioinform., 2012)

Managing NGS Differential Expression Uncertainty with Fuzzy Sets. - Arianna Consiglio; Corrado Mencar; Giorgio Grillo; Sabino Liuni (CIBB, 2015)

A fuzzy method for RNA-Seq differential expression analysis in presence of multireads. - Arianna Consiglio; Corrado Mencar; Giorgio Grillo; Flaviana Marzano; Mariano Francesco Caratozzolo; Sabino Liuni (BMC Bioinform., 2016)

WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes. - Simone Puccio; Giorgio Grillo; Flavio Licciulli; Marco Severgnini; Sabino Liuni; Silvio Bicciato; Gianluca De Bellis; Francesco Ferrari; Clelia Peano (Nucleic Acids Res., 2017)

Arena-Idb: a platform to build human non-coding RNA interaction networks. - Vincenzo Bonnici; Giorgio De Caro; Giorgio Constantino; Sabino Liuni; Domenica D'Elia; Nicola Bombieri; Flavio Licciulli; Rosalba Giugno (BMC Bioinform., 2018)

ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences. - Monica Santamaria; Bruno Fosso; Flavio Licciulli; Bachir Balech; Ilaria Larini; Giorgio Grillo; Giorgio De Caro; Sabino Liuni; Graziano Pesole (Nucleic Acids Res., 2018)

InteractomeSeq: a web server for the identification and profiling of domains and epitopes from phage display and next generation sequencing data. - Simone Puccio; Giorgio Grillo; Arianna Consiglio; Maria Felicia Soluri; Daniele Sblattero; Diego Cotella; Claudio Santoro; Sabino Liuni; Gianluca De Bellis; Enrico Lugli; Clelia Peano; Flavio Licciulli (Nucleic Acids Res., 2020)