The Zebrafish Experimental Conditions Ontology Systemizing Experimental Descriptions in ZFIN. - Yvonne M. Bradford; Ceri E. Van Slyke; Sabrina Toro; Sridhar Ramachandran (ICBO/BioCreative, 2016)

The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching. - Douglas G. Howe; Yvonne M. Bradford; Anne E. Eagle; David Fashena; Ken Frazer; Patrick Kalita; Prita Mani; Ryan Martin; Sierra Taylor Moxon; Holly Paddock; Christian Pich 002; Sridhar Ramachandran; et al. (Nucleic Acids Res., 2017)

Annotation of gene product function from high-throughput studies using the Gene Ontology. - Helen Attrill; Pascale Gaudet; Rachael P. Huntley; Ruth C. Lovering; Stacia R. Engel; Sylvain Poux; Kimberly M. Van Auken; George E. Georghiou; Marcus C. Chibucos; Tanya Z. Berardini; Valerie Wood; Harold J. Drabkin; et al. (Database J. Biol. Databases Curation, 2019)

The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources. - Leyla Ruzicka; Douglas G. Howe; Sridhar Ramachandran; Sabrina Toro; Ceri E. Van Slyke; Yvonne M. Bradford; Anne E. Eagle; David Fashena; Ken Frazer; Patrick Kalita; Prita Mani; Ryan Martin; et al. (Nucleic Acids Res., 2019)

Alliance of Genome Resources Portal: unified model organism research platform. - Julie Agapite; Laurent-Philippe Albou; Suzi A. Aleksander; Joanna Argasinska; Valerio Arnaboldi; Helen Attrill; Susan M. Bello; Judith A. Blake; Olin Blodgett; Yvonne M. Bradford; Carol J. Bult; Scott Cain; et al. (Nucleic Acids Res., 2020)

Reclassification of Infectious Disease in the Mondo Disease Ontology. - Nicole A. Vasilevsky; Sabrina Toro; Nicolas Matentzoglu; Dazhi Jiao; Melissa A. Haendel; Peter N. Robinson; Christopher J. Mungall (ICBO, 2021)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

The Zebrafish Information Network: major gene page and home page updates. - Douglas G. Howe; Sridhar Ramachandran; Yvonne M. Bradford; David Fashena; Sabrina Toro; Anne E. Eagle; Ken Frazer; Patrick Kalita; Prita Mani; Ryan Martin; Sierra Taylor Moxon; Holly Paddock; et al. (Nucleic Acids Res., 2021)

OBO Academy: Training Materials for Bioontologists. - James A. Overton; Rebecca C. Jackson; Sabrina Toro; Shawn Zheng Kai Tan; Bradley Varner; David Osumi-Sutherland; Nicolas Matentzoglu; Nicole A. Vasilevsky (ICBO, 2022)

Classifying Animal Breeds with the Vertebrate Breed Ontology (VBO). - Sabrina Toro; Nicolas Matentzoglu; Kathleen R. Mullen; Nicole A. Vasilevsky; Halie Rando; Melissa A. Haendel; Christopher J. Mungall; Zhi-Liang Hu; Gregoire Leroy; Imke Tammen; Frank W. Nicholas (ICBO, 2022)

A simple standard for ontological mappings 2022: updates of data model and outlook. - Nicolas Matentzoglu; Joe E. Flack; John B. Graybeal; Nomi L. Harris; Harshad B. Hegde; Charles Tapley Hoyt; Hyeongsik Kim 001; Sabrina Toro; Nicole A. Vasilevsky; Christopher J. Mungall (OM@ISWC, 2022)

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. - Nicolas Matentzoglu; Damien Goutte-Gattat; Shawn Zheng Kai Tan; James P. Balhoff; Seth Carbon; Anita R. Caron; William D. Duncan; Joe E. Flack; Melissa A. Haendel; Nomi L. Harris; William R. Hogan; Charles Tapley Hoyt; et al. (Database J. Biol. Databases Curation, 2022)

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. - Nicolas Matentzoglu; Damien Goutte-Gattat; Shawn Zheng Kai Tan; James P. Balhoff; Seth Carbon; Anita R. Caron; William D. Duncan; Joe E. Flack; Melissa A. Haendel; Nomi L. Harris; William R. Hogan; Charles Tapley Hoyt; et al. (CoRR, 2022)

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). - Sabrina Toro; Anna V. Anagnostopoulos; Sue Bello; Kai Lewis Blumberg; Rhiannon Cameron; Leigh Carmody; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Petra Fey; Pascale Gaudet; Nomi L. Harris; et al. (CoRR, 2023)

The Vertebrate Breed Ontology: Towards Effective Breed Data Standardization. - Kathleen R. Mullen; Imke Tammen; Nicolas A. Matentzoglu; Marius Mather; Christopher J. Mungall; Melissa A. Haendel; Frank W. Nicholas; Sabrina Toro; Vertebrate Breed Ontology Consortium (CoRR, 2024)

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). - Sabrina Toro; Anna V. Anagnostopoulos; Susan M. Bello; Kai Lewis Blumberg; Rhiannon Cameron; Leigh Carmody; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Petra Fey; Pascale Gaudet; Nomi L. Harris; et al. (J. Biomed. Semant., 2024)

The Cell Ontology in the age of single-cell omics. - Shawn Zheng Kai Tan; Aleix Puig-Barbe; Damien Goutte-Gattat; Caroline Eastwood; Brian D. Aevermann; Alida Avola; James P. Balhoff; Ismail Ugur Bayindir; Jasmine Belfiore; Anita R. Caron; David S. Fischer; Nancy George; et al. (CoRR, 2025)