Reflective Random Indexing to Develop a Medication-Problem Knowledge Base. - Safa Fathiamini; Trevor Cohen; Allison B. McCoy; Dean F. Sittig (AMIA, 2013)

Exploring the Use of SemRep Predications to Help Identify Secondary Drug Targets for Personalized Cancer Therapy. - Safa Fathiamini; Amber M. Johnson; Vijaykumar Holla; Ann M. Bailey; Jia Zeng; Lauren Brusco; Funda Meric-Bernstam; Elmer V. Bernstam; Trevor Cohen (AMIA, 2014)

Development of a clinician reputation metric to identify appropriate problem-medication pairs in a crowdsourced knowledge base. - Allison B. McCoy; Adam Wright; Deevakar Rogith; Safa Fathiamini; Allison J. Ottenbacher; Dean F. Sittig (J. Biomed. Informatics, 2014)

A Regional Cardiovascular Data Registry Linking Hospitals and Ambulances. - James R. Langabeer II; Safa Fathiamini; Tiffany Champagne-Langabeer; Jennifer Mikhail; Wendy Segrest; Raymond Fowler (AMIA, 2016)

Automated identification of molecular effects of drugs (AIMED). - Safa Fathiamini; Amber M. Johnson; Jia Zeng; Alejandro Araya; Vijaykumar Holla; Ann M. Bailey; Beate Litzenburger; Nora S. Sanchez; Yekaterina Khotskaya; Hua Xu 001; Funda Meric-Bernstam; Elmer V. Bernstam; et al. (J. Am. Medical Informatics Assoc., 2016)

Rapamycin-mTOR+BRAF=? Using relational similarity to find therapeutically relevant drug-gene relationships in unstructured text. - Safa Fathiamini; Amber M. Johnson; Jia Zeng; Vijaykumar Holla; Nora S. Sanchez; Funda Meric-Bernstam; Elmer V. Bernstam; Trevor Cohen (J. Biomed. Informatics, 2019)