Hybrid docking-QSAR studies of DPP-IV inhibition activities of a series of aminomethyl-piperidones. - Zohreh Amini; Mohammad Hossein Fatemi; Sajjad Gharaghani (Comput. Biol. Chem., 2016)

Toward a hierarchical virtual screening and toxicity risk analysis for identifying novel CA XII inhibitors. - Elmira Nazarshodeh; Sajjad Gharaghani (Biosyst., 2017)

A Survey on semi-supervised feature selection methods. - Razieh Sheikhpour; Mehdi Agha Sarram; Sajjad Gharaghani; Mohammad Ali Zare Chahooki (Pattern Recognit., 2017)

In silico drug repositioning of FDA-approved drugs to predict new inhibitors for alpha-synuclein aggregation. - Sedighe Sadat Jafaripour; Sajjad Gharaghani; Elmira Nazarshodeh; Shozeb Haider; Ali Akbar Saboury (Comput. Biol. Chem., 2020)

NDDSA: A network- and domain-based method for predicting drug-side effect associations. - Soheila Shabani-Mashcool; Sayed-Amir Marashi; Sajjad Gharaghani (Inf. Process. Manag., 2020)

A robust graph-based semi-supervised sparse feature selection method. - Razieh Sheikhpour; Mehdi Agha Sarram; Sajjad Gharaghani; Mohammad Ali Zare Chahooki (Inf. Sci., 2020)

AutoDTI++: deep unsupervised learning for DTI prediction by autoencoders. - Seyedeh Zahra Sajadi; Mohammad Ali Zare Chahooki; Sajjad Gharaghani; Karim Abbasi (BMC Bioinform., 2021)

Moonlighting protein prediction using physico-chemical and evolutional properties via machine learning methods. - Farshid Shirafkan; Sajjad Gharaghani; Karim Rahimian; Reza Hasan Sajedi; Javad Zahiri (BMC Bioinform., 2021)

Correction to: Moonlighting protein prediction using physico‑chemical and evolutional properties via machine learning methods. - Farshid Shirafkan; Sajjad Gharaghani; Karim Rahimian; Reza Hasan Sajedi; Javad Zahiri (BMC Bioinform., 2021)

DRaW: prediction of COVID-19 antivirals by deep learning - an objection on using matrix factorization. - S. Morteza Hashemi; Arash Zabihian; Mohsen Hooshmand; Sajjad Gharaghani (BMC Bioinform., 2023)

TripletMultiDTI: Multimodal representation learning in drug-target interaction prediction with triplet loss function. - Alireza Dehghan; Parvin Razzaghi; Karim Abbasi; Sajjad Gharaghani (Expert Syst. Appl., 2023)

CCL-DTI: contributing the contrastive loss in drug-target interaction prediction. - Alireza Dehghan; Karim Abbasi; Parvin Razzaghi; Hossein Banadkuki; Sajjad Gharaghani (BMC Bioinform., 2024)