Analysis of enzymopathies in the human red blood cells by constraint-based stoichiometric modeling approaches. - Saliha Durmus Tekir; Tunahan Çakir; Kutlu Ö. Ülgen (Comput. Biol. Chem., 2006)

Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network. - Saliha Durmus Tekir; Kazim Yalçin Arga; Kutlu Ö. Ülgen (J. Biomed. Informatics, 2009)

Reconstruction and crosstalk of protein-protein interaction networks of Wnt and Hedgehog signaling in Drosophila melanogaster. - Aysun Eren Toku; Saliha Durmus Tekir; Fatma Betül Kavun Özbayraktar; Kutlu Ö. Ülgen (Comput. Biol. Chem., 2011)

PHISTO: pathogen-host interaction search tool. - Saliha Durmus Tekir; Tunahan Çakir; Emre Ardiç; Ali Semih Sayilirbas; Gökhan Konuk; Mithat Konuk; Hasret Sariyer; Azat Ugurlu; Ilknur Karadeniz; Arzucan Özgür; Fatih Erdogan Sevilgen; Kutlu Ö. Ülgen (Bioinform., 2013)