CoCAS: a ChIP-on-chip analysis suite. - Touati Benoukraf; Pierre Cauchy; Romain Fenouil; Adrien Jeanniard; Frederic Koch; Sébastien Jaeger; Denis Thieffry; Jean Imbert; Jean-Christophe Andrau; Salvatore Spicuglia; Pierre Ferrier (Bioinform., 2009)

Explore, edit and leverage genomic annotations using Python GTF toolkit. - Frédéric Lopez; Guillaume Charbonnier; Yasmina Kermezli; Mohamed Belhocine; Quentin Ferré; N. Zweig; Mourad Aribi; Aitor González; Salvatore Spicuglia; Denis Puthier (Bioinform., 2019)

OLOGRAM: determining significance of total overlap length between genomic regions sets. - Quentin Ferré; Guillaume Charbonnier; N. Sadouni; Frédéric Lopez; Yasmina Kermezli; Salvatore Spicuglia; Cécile Capponi; Badih Ghattas; Denis Puthier (Bioinform., 2020)

Detecting subtle transcriptomic perturbations induced by lncRNAs knock-down in single-cell CRISPRi screening using a new sparse supervised autoencoder neural network. - Marin Truchi; Caroline Lacoux; Cyprien Gille; Julien Fassy; Virginie Magnone; Rafael Lopes Goncalves; Cédric Girard Riboulleau; Iris Manosalva-Pena; Marine Gautier-Isola; Kevin Lebrigand; Pascal Barbry; Salvatore Spicuglia; et al. (Frontiers Bioinform., 2024)