Sigmoni: classification of nanopore signal with a compressed pangenome index. - Vikram Shivakumar; Omar Y. Ahmed; Sam Kovaka; Mohsen Zakeri; Ben Langmead (Bioinform., 2024)

StephenHwang/MEMO. - Stephen Hwang; Nathaniel K. Brown; Omar Y. Ahmed; Katharine M. Jenike; Sam Kovaka; Michael C. Schatz; Ben Langmead (DROPS Artifacts, 2024)

StephenHwang/MEMO_experiments. - Stephen Hwang; Nathaniel K. Brown; Omar Y. Ahmed; Katharine M. Jenike; Sam Kovaka; Michael C. Schatz; Ben Langmead (DROPS Artifacts, 2024)

Mem-based pangenome indexing for k-mer queries. - Stephen Hwang; Nathaniel K. Brown; Omar Y. Ahmed; Katharine M. Jenike; Sam Kovaka; Michael C. Schatz; Ben Langmead (Algorithms Mol. Biol., 2025)