Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling. - Zeeshan Ahmed 001; Saman Zeeshan; Claudia Huber; Michael Hensel; Dietmar Schomburg; Richard Münch; Wolfgang Eisenreich; Thomas Dandekar (BMC Bioinform., 2013)

'Isotopo' a database application for facile analysis and management of mass isotopomer data. - Zeeshan Ahmed 001; Saman Zeeshan; Claudia Huber; Michael Hensel; Dietmar Schomburg; Richard Münch; Eva Eylert; Wolfgang Eisenreich; Thomas Dandekar (Database J. Biol. Databases Curation, 2014)

Developing sustainable software solutions for bioinformatics by the "Butterfly" paradigm. - Zeeshan Ahmed 001; Saman Zeeshan; Thomas Dandekar (F1000Research, 2014)

Implementation of Bioinformatics Methods for miRNA and Metabolic Modelling (Die Umsetzung der Bioinformatik-Methoden für miRNA-und der Metabolischen Modellierung) - Saman Zeeshan (2014)

Lipid-Pro: a computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms. - Zeeshan Ahmed 001; Michel Mayr; Saman Zeeshan; Thomas Dandekar; Martin J. Mueller; Agnes Fekete (Bioinform., 2015)

Mining biomedical images towards valuable information retrieval in biomedical and life sciences. - Zeeshan Ahmed 001; Saman Zeeshan; Thomas Dandekar (Database J. Biol. Databases Curation, 2016)

PAS-SNP: iOS App with GWAS SNP-Disease Database for Personalized Genomics Research: PAS-SNP for GWAS SNP-Disease. - Zeeshan Ahmed 001; Saman Zeeshan; Bruce T. Liang (BIBM, 2019)

PAS-Code: iOS App with Mobile Access to the International Classified Disease and Drug Databases for Health Informatics & Precision Medicine: PAS-Code with ICD and NDC. - Zeeshan Ahmed 001; Saman Zeeshan; Bruce T. Liang (BIBM, 2019)

PAS-MUT with Somatic Mutations in Cancer and Classified Diseases for Clinical-Genomics Research: PAS-MUT & Somatic Mutations. - Saman Zeeshan; Zeeshan Ahmed 001 (BIBM, 2019)

100 Years of evolving gene-disease complexities and scientific debutants. - Saman Zeeshan; Ruoyun Xiong; Bruce T. Liang; Zeeshan Ahmed 001 (Briefings Bioinform., 2020)

Artificial intelligence with multi-functional machine learning platform development for better healthcare and precision medicine. - Zeeshan Ahmed 001; Khalid Mohamed; Saman Zeeshan; Xinqi Dong (Database J. Biol. Databases Curation, 2020)

Artificial intelligence and machine learning approaches using gene expression and variant data for personalized medicine. - Sreya Vadapalli; Habiba Abdelhalim; Saman Zeeshan; Zeeshan Ahmed 001 (Briefings Bioinform., 2022)

IntelliGenes: a novel machine learning pipeline for biomarker discovery and predictive analysis using multi-genomic profiles. - William DeGroat; Dinesh Mendhe; Atharva Bhusari; Habiba Abdelhalim; Saman Zeeshan; Zeeshan Ahmed 001 (Bioinform., 2023)