Cortical Computation via Iterative Constructions. - Christos H. Papadimitriou; Samantha Petti; Santosh S. Vempala (COLT, 2016)

The covertime of a biased random walk on Gn, p. - Colin Cooper; Alan M. Frieze; Samantha Petti (CoRR, 2017)

Random Overlapping Communities: Approximating Motif Densities of Large Graphs. - Samantha Petti; Santosh S. Vempala (CoRR, 2017)

A Space of Phylogenetic Networks. - Satyan L. Devadoss; Samantha Petti (SIAM J. Appl. Algebra Geom., 2017)

The cover time of a biased random walk on Gn, p. - Colin Cooper; Alan M. Frieze; Samantha Petti (ANALCO, 2018)

Balanced allocation through random walk. - Alan M. Frieze; Samantha Petti (Inf. Process. Lett., 2018)

Thresholds in Random Motif Graphs. - Michael Anastos; Peleg Michaeli; Samantha Petti (APPROX-RANDOM, 2019)

Correlation decay for hard spheres via Markov chains. - Tyler Helmuth; Will Perkins 001; Samantha Petti (CoRR, 2020)

Randomness as a tool for modeling and uncovering structure. - Samantha Petti (2020)

Constructing benchmark test sets for biological sequence analysis using independent set algorithms. - Samantha Petti; Sean R. Eddy (PLoS Comput. Biol., 2022)

Approximating sparse graphs: The random overlapping communities model. - Samantha Petti; Santosh S. Vempala (Random Struct. Algorithms, 2022)

End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman. - Samantha Petti; Nicholas Bhattacharya; Roshan Rao; Justas Dauparas; Neil Thomas; Juannan Zhou; Alexander M. Rush; Peter K. Koo; Sergey Ovchinnikov 001 (Bioinform., 2023)

Correction: Constructing Benchmark Test Sets for Biological Sequence Analysis Using Independent Set Algorithms. - Samantha Petti; Sean R. Eddy (PLoS Comput. Biol., 2023)

Inferring genotype-phenotype maps using attention models. - Krishna Rijal; Caroline M. Holmes; Samantha Petti; Gautam Reddy; Michael M. Desai; Pankaj Mehta (CoRR, 2025)

On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing. - Samantha Petti; Carlos Martí-Gómez; Justin B. Kinney; Juannan Zhou; David M. McCandlish (CoRR, 2025)