PeterNet: An Emergent Technology Based Radio Access Network Architecture for Next Generation Cellular Wireless Systems. - Samik Ghosh; Pradip De; Kalyan Basu; Sajal K. Das 001 (BROADNETS, 2004)

A Diffusion Model to Estimate the Inter-arrival Time of Charged Molecules in Stochastic Event based Modeling of Complex Biological Networks. - Preetam Ghosh; Samik Ghosh; Kalyan Basu; Sajal K. Das 001 (CSB Workshops, 2005)

iSimBioSys: An "In Silico" Discrete Event Simulation Framework for Modeling Biological Systems. - Samik Ghosh; Preetam Ghosh; Kalyan Basu; Sajal K. Das 001 (CSB Workshops, 2005)

FraNtiC: A Fractal Geometric Framework for Mesh-Based Wireless Access Networks. - Samik Ghosh; Kalyan Basu; Sajal K. Das 001 (ICDCS, 2005)

GaMa : An Evolutionary Algorithmic Approach for the Design of Mesh-Based Radio Access Networks. - Samik Ghosh; Preetam Ghosh; Kalyan Basu; Sajal K. Das 001 (LCN, 2005)

iSimBioSys: A Discrete Event Simulation Platform for 'in silico' study of biological systems. - Samik Ghosh; Preetam Ghosh; Kalyan Basu; Sajal K. Das 001; Simon Daefler (Annual Simulation Symposium, 2006)

A Stochastic model to estimate the time taken for Protein-Ligand Docking. - Preetam Ghosh; Samik Ghosh; Kalyan Basu; Sajal K. Das 001; Simon Daefler (CIBCB, 2006)

An analytical model to estimate the time taken for cytoplasmic reactions for stochastic simulation of complex biological systems. - Preetam Ghosh; Samik Ghosh; Kalyan Basu; Sajal K. Das 001; Simon Daefler (GrC, 2006)

Stochastic Modeling of Cytoplasmic Reactions in Complex Biological Systems. - Preetam Ghosh; Samik Ghosh; Kalyan Basu; Sajal K. Das 001; Simon Daefler (ICCSA (1), 2006)

Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis. - Samik Ghosh; Preetam Ghosh; Kalyan Basu; Sajal K. Das 001 (BIBM, 2007)

Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes. - Preetam Ghosh; Samik Ghosh; Kalyan Basu; Sajal K. Das 001 (CIBCB, 2007)

Revisiting the Optimal Partitioning of Zones in Next Generation Cellular Networks: A Network Capacity Impact Perspective. - Samik Ghosh; Huan Li; Hee Lee; Prabir Das; Kalyan Basu; Sajal K. Das 001 (ITC, 2007)

"MeshUp": Self-organizing mesh-based topologies for next generation radio access networks. - Samik Ghosh; Kalyan Basu; Sajal K. Das 001 (Ad Hoc Networks, 2007)

Channel Assignment Strategies for Multiradio Wireless Mesh Networks: Issues and Solutions. - Habiba Skalli; Samik Ghosh; Sajal K. Das 001; Luciano Lenzini (IEEE Commun. Mag., 2007)

A Computationally Fast and Parametric Model to Estimate Protein-Ligand Docking Time for Stochastic Event Based Simulation. - Preetam Ghosh; Samik Ghosh; Kalyan Basu; Sajal K. Das 001 (Trans. Comp. Sys. Biology, 2007)

Holding time estimation for reactions in stochastic event-based simulation of complex biological systems. - Preetam Ghosh; Samik Ghosh; Kalyan Basu; Sajal K. Das 001 (Simul. Model. Pract. Theory, 2008)

Parametric modeling of protein-DNA binding kinetics: A discrete event based simulation approach. - Preetam Ghosh; Samik Ghosh; Kalyan Basu; Sajal K. Das 001 (Discret. Appl. Math., 2009)

Payao: a community platform for SBML pathway model curation. - Yukiko Matsuoka; Samik Ghosh; Norihiro Kikuchi; Hiroaki Kitano (Bioinform., 2010)

AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease. - Satoshi Mizuno; Risa Iijima; Soichi Ogishima; Masataka Kikuchi; Yukiko Matsuoka; Samik Ghosh; Tadashi Miyamoto; Akinori Miyashita; Ryozo Kuwano; Hiroshi Tanaka (BMC Syst. Biol., 2012)

A versatile platform for multilevel modeling of physiological systems: Template/instance framework for large-scale modeling and simulation. - Yoshiyuki Asai; Takeshi Abe; Hideki Oka; Masao Okita; Tomohiro Okuyama; Kenichi Hagihara; Samik Ghosh; Yukiko Matsuoka; Yoshihisa Kurachi; Hiroaki Kitano (EMBC, 2013)

A comprehensive map of the influenza A virus replication cycle. - Yukiko Matsuoka; Hiromi Matsumae; Manami Katoh; Amie J. Eisfeld; Gabriele Neumann; Takeshi Hase; Samik Ghosh; Jason E. Shoemaker; Tiago J. S. Lopes; Tokiko Watanabe; Shinji Watanabe 007; Satoshi Fukuyama; et al. (BMC Syst. Biol., 2013)

Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks. - Takeshi Hase; Samik Ghosh; Ryota Yamanaka; Hiroaki Kitano (PLoS Comput. Biol., 2013)

Identification of drug-target modules in the human protein-protein interaction network. - Takeshi Hase; Kaito Kikuchi; Samik Ghosh; Hiroaki Kitano; Hiroshi Tanaka (Artif. Life Robotics, 2014)

Extracting Biological Pathway Models From NLP Event Representations. - Michael Spranger; Sucheendra K. Palaniappan; Samik Ghosh (BioNLP@IJCNLP, 2015)

Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway. - Michael Spranger; Sucheendra K. Palaniappan; Samik Ghosh (BioNLP@ACL, 2016)

Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure. - Stéphanie Boué; Thomas E. Exner; Samik Ghosh; Vincenzo Belcastro; Joh Dokler; David Page; Akash R. Boda; Filipe Bonjour; Barry J. Hardy; Patrick Vanscheeuwijck; Julia Hoeng; Manuel C. Peitsch (F1000Research, 2017)

Computational Systems Biology. - Sucheendra K. Palaniappan; Ayako Yachie-Kinoshita; Samik Ghosh (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Computational Systems Biology Applications. - Ayako Yachie-Kinoshita; Sucheendra K. Palaniappan; Samik Ghosh (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)