SimDS: A Simulation Environment for the Design of Distributed Database Systems. - Alok R. Chaturvedi; Samir Gupta; Subhajyoti Bandyopadhyay (Data Base, 1998)

Part-of-speech tagging of program identifiers for improved text-based software engineering tools. - Samir Gupta; Sana Malik; Lori L. Pollock; K. Vijay-Shanker (ICPC, 2013)

Automatically mining software-based, semantically-similar words from comment-code mappings. - Matthew J. Howard; Samir Gupta; Lori L. Pollock; K. Vijay-Shanker (MSR, 2013)

An extended dependency graph for relation extraction in biomedical texts. - Yifan Peng 002; Samir Gupta; Cathy H. Wu; K. Vijay-Shanker (BioNLP@IJCNLP, 2015)

miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with Diseases. - Samir Gupta; Karen E. Ross; Catalina O. Tudor; Cathy H. Wu; Carl J. Schmidt; K. Vijay-Shanker (J. Biomed. Semant., 2016)

Development of the Parkland-UT Southwestern Colonoscopy Reporting System (CoRS) for evidence-based colon cancer surveillance recommendations. - Celette Sugg Skinner; Samir Gupta; Ethan A. Halm; Shaun Wright; Katharine McCallister; Wendy Bishop; Noel Santini; Christian Mayorga; Deepak Agrawal; Brett A. Moran; Joanne M. Sanders; Amit G. Singal (J. Am. Medical Informatics Assoc., 2016)

Identifying Comparative Structures in Biomedical Text. - Samir Gupta; A. S. M. Ashique Mahmood; Karen Ross; Cathy H. Wu; K. Vijay-Shanker (BioNLP, 2017)

A Design and Implementation of an Ambulatory Electrocardiogram (ECG) Acquisition Circuit for Emergency Application. - Jiewei Feng; Shahriar Hasan Shehab; Yang Yang 034; Nemai C. Karmakar; Samir Gupta (ISMICT, 2018)

DEXTER: Disease-Expression Relation Extraction from Text. - Samir Gupta; Hayley Dingerdissen; Karen E. Ross; Yu Hu 015; Cathy H. Wu; Raja Mazumder; K. Vijay-Shanker (Database J. Biol. Databases Curation, 2018)

Identification of key differentially expressed MicroRNAs in cancer patients through pan-cancer analysis. - Yu Hu 015; Hayley Dingerdissen; Samir Gupta; Robel Y. Kahsay; K. Vijay-Shanker; Quan Wan; Cheng Yan; Raja Mazumder (Comput. Biol. Medicine, 2018)

OncoMX: an Integrated Cancer Mutation and Expression Knowledgebase for Biomarker Evaluation and Discovery. - Amanda Bell; Raja Mazumder; Daniel J. Crichton; Vijay K. Shanker; Frédéric B. Bastian; Hayley Dingerdissen; Samir Gupta; Evan Holmes; Robel Y. Kahsay; Heather L. Kincaid; A. S. M. Ashique Mahmood; Marc Robinson-Rechavi; et al. (AMIA, 2019)

Automated Identification of Patients with Immune-related Adverse Events from Clinical Notes using Machine Learning. - Samir Gupta; Anas Belouali; Neil J. Shah; Michael Atkins; Subha Madhavan (AMIA, 2020)

Linking Polyps to Jars: information loss across colonoscopy and pathology reports. - Olga V. Patterson; Samir Gupta; Andrew Gawron; Tonya Kaltenbach; Ranier Bustamante; Lin Liu; Daniel W. Denhalter; Ashley Earles; Scott L. DuVall (AMIA, 2020)

Identification of Patients with Immune-related Adverse Events from Clinical Notes using Machine Learning. - Samir Gupta; Anas Belouali; Neil J. Shah; Michael Atkins; Subha Madhavan (ICHI, 2020)

Development process and patient usability preferences for a touch screen tablet-based questionnaire. - Victor Lam Shin Cheung; Monika Kastner; Joanna Em Sale; Sharon E. Straus; Alan Kaplan; Louis-Philippe Boulet; Samir Gupta (Health Informatics J., 2020)

A system uptake analysis and GUIDES checklist evaluation of the Electronic Asthma Management System: A point-of-care computerized clinical decision support system. - Jeffrey Lam Shin Cheung; Natalie Paolucci; Courtney Price; Jenna Sykes; Samir Gupta (J. Am. Medical Informatics Assoc., 2020)

Acoustic and language analysis of speech for suicidal ideation among US veterans. - Anas Belouali; Samir Gupta; Vaibhav Sourirajan; Jiawei Yu; Nathaniel Allen; Adil Alaoui; Mary Ann Dutton; Matthew J. Reinhard (BioData Min., 2021)

emiRIT: a text-mining-based resource for microRNA information. - Debarati Roychowdhury; Samir Gupta; Xihan Qin; Cecilia N. Arighi; K. Vijay-Shanker (Database J. Biol. Databases Curation, 2021)

A strategy for validation of variables derived from large-scale electronic health record data. - Lin Liu; Ranier Bustamante; Ashley Earles; Joshua Demb; Karen Messer; Samir Gupta (J. Biomed. Informatics, 2021)

Addressing APC Data Sparsity in Predicting Occupancy and Delay of Transit Buses: A Multitask Learning Approach. - Ammar Bin Zulqarnain; Samir Gupta; Jose Paolo Talusan; Daniel Freudberg; Philip Pugliese; Ayan Mukhopadhyay; Abhishek Dubey (SMARTCOMP, 2023)

Improving computerized decision support system interventions: a qualitative study combining the theoretical domains framework with the GUIDES Checklist. - Janet Yamada; Andrew Kouri; Sarah Nicole Simard; Jeffrey Lam Shin Cheung; Stephanie Segovia; Samir Gupta (BMC Medical Informatics Decis. Mak., 2023)

PhD Forum: Towards Efficient Urban Mobility: Leveraging GNN and MTL for Demand Forecasting. - Samir Gupta (SMARTCOMP, 2024)

A Graph Neural Network Framework for Imbalanced Bus Ridership Forecasting. - Samir Gupta; Agrima Khanna; Jose Paolo Talusan; Anwar Said; Daniel Freudberg; Ayan Mukhopadhyay; Abhishek Dubey (SMARTCOMP, 2024)

PDPTW-DB: MILP-Based Offline Route Planning for PDPTW with Driver Breaks. - Agrima Khanna; Fangqi Liu 001; Samir Gupta; Sophie Pavia; Ayan Mukhopadhyay; Abhishek Dubey (ICDCN, 2025)

AVATAR: Autonomy Aware Routing for On-demand Transit Applications. - David Rogers; Samir Gupta; Jose Paolo Talusan; Ammar Bin Zulqarnain; Mirza Baig; Arti Ramesh; Natsu Takahashi; Naoki Kojo; Abhishek Dubey (SMARTCOMP, 2025)