Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks. - David A. Nix; Samir J. Courdy; Kenneth M. Boucher (BMC Bioinform., 2008)

Next generation tools for genomic data generation, distribution, and visualization. - David A. Nix; Tonya L. Di Sera; Brian K. Dalley; Brett A. Milash; Robert M. Cundick; Kevin S. Quinn; Samir J. Courdy (BMC Bioinform., 2010)

Identifying clinical/translational research cohorts: ascertainment via querying an integrated multi-source database. - John F. Hurdle; Stephen C. Haroldsen; Andrew Hammer; Cindy Spigle; Alison M. Fraser; Geraldine P. Mineau; Samir J. Courdy (J. Am. Medical Informatics Assoc., 2013)