Role of toxin and nutrient for the occurrence and termination of plankton bloom - Results drawn from field observations and a mathematical model. - Samares Pal; Samrat Chatterjee; Joydev Chattopadhyay (Biosyst., 2007)

Defining the antigen receptor-dependent regulatory network that induces arrest of cycling immature B-lymphocytes. - Mohammad Jamal; Srikanth Ravichandran; Noor Jailkhani; Samrat Chatterjee; Raina Dua; Kanury Rao (BMC Syst. Biol., 2010)

Bottom up and top down effect on toxin producing phytoplankton and its consequence on the formation of plankton bloom. - Anal Chatterjee; Samares Pal; Samrat Chatterjee (Appl. Math. Comput., 2011)

Molecular signatures for obesity and associated disorders identified through partial least square regression models. - Neeraj Sinha; Sachin Sharma; Parul Tripathi; Simarjeet Negi; Kamiya Tikoo; Dhiraj Kumar; Kanury Rao; Samrat Chatterjee (BMC Syst. Biol., 2014)

A Systems Approach for Evaluating the Effectiveness of Radiological and Nuclear Detection Architectures in Urban Areas. - Samrat Chatterjee; Daniel E. Salazar Aponte; Isaac Maya (Syst. Eng., 2014)

Formal Approach for Resilient Reachability based on End-System Route Agility. - Usman Rauf; Fida Gillani; Ehab Al-Shaer; Mahantesh Halappanavar; Samrat Chatterjee; Christopher S. Oehmen (MTD@CCS, 2016)

A new method of finding groups of coexpressed genes and conditions of coexpression. - Rajat Anand; Srikanth Ravichandran; Samrat Chatterjee (BMC Bioinform., 2016)

A mathematical model predicting host mitochondrial pyruvate transporter activity to be a critical regulator of Mycobacterium tuberculosis pathogenicity. - Parul Mehrotra; Kanury Rao; Samrat Chatterjee (Biosyst., 2017)

Extracting Genes Involved in Disease from a Connected Network of Perturbed Biological Processes. - Rajat Anand; Samrat Chatterjee (J. Comput. Biol., 2017)

Characterization of the Impact of Soft Errors on Iterative Methods. - Burcu Ozcelik Mutlu; Gokcen Kestor; Joseph B. Manzano; Osman S. Unsal; Samrat Chatterjee; Sriram Krishnamoorthy (HiPC, 2018)

Extracting proteins involved in disease progression using temporally connected networks. - Rajat Anand; Dipanka Sarmah; Samrat Chatterjee (BMC Syst. Biol., 2018)

Learning and Information Manipulation: Repeated Hypergames for Cyber-Physical Security. - Craig Bakker; Arnab Bhattacharya 008; Samrat Chatterjee; Draguna L. Vrabie (IEEE Control. Syst. Lett., 2020)

Multi-Game Modeling for Counter-Smuggling. - Craig Bakker; Jennifer B. Webster; Kathleen E. Nowak; Samrat Chatterjee; Casey J. Perkins; Robert Brigantic (Reliab. Eng. Syst. Saf., 2020)

An iterative learning and inference approach to managing dynamic cyber vulnerabilities of complex systems. - Samrat Chatterjee; Shital A. Thekdi (Reliab. Eng. Syst. Saf., 2020)

Hypergames and Cyber-Physical Security for Control Systems. - Craig Bakker; Arnab Bhattacharya 008; Samrat Chatterjee; Draguna L. Vrabie (ACM Trans. Cyber Phys. Syst., 2020)

Solving the Dynamics-Aware Economic Dispatch Problem with the Koopman Operator. - Ethan King; Craig Bakker; Arnab Bhattacharya 008; Samrat Chatterjee; Feng Pan; Matthew R. Oster; Casey J. Perkins (e-Energy, 2021)

User Role Identification in Software Vulnerability Discussions over Social Networks. - Rebecca Jones; Daniel Fortin; Samrat Chatterjee; Dennis G. Thomas; Lisa Newburn (ISI, 2021)

Tracing the footsteps of autophagy in computational biology. - Dipanka Sarmah; Nandadulal Bairagi; Samrat Chatterjee (Briefings Bioinform., 2021)

The interplay between DNA damage and autophagy in lung cancer: A mathematical study. - Dipanka Sarmah; Nandadulal Bairagi; Samrat Chatterjee (Biosyst., 2021)

Efficient sampling of complex interdependent and multiplex networks. - Omer Subasi; Samrat Chatterjee (J. Complex Networks, 2021)

Constraints Satisfiability Driven Reinforcement Learning for Autonomous Cyber Defense. - Ashutosh Dutta; Ehab Al-Shaer; Samrat Chatterjee (CoRR, 2021)

Lorenz System State Stability Identification using Neural Networks. - Megha Subramanian; Ramakrishna Tipireddy; Samrat Chatterjee (CoRR, 2021)

Metagames and Hypergames for Deception-Robust Control. - Craig Bakker; Arnab Bhattacharya 008; Samrat Chatterjee; Draguna L. Vrabie (ACM Trans. Cyber Phys. Syst., 2021)

Bistability in cell signalling and its significance in identifying potential drug-targets. - Suvankar Halder; Sumana Ghosh; Joydev Chattopadhyay; Samrat Chatterjee (Bioinform., 2021)

Elucidating the metabolic characteristics of pancreatic β-cells from patients with type 2 diabetes (T2D) using a genome-scale metabolic modeling. - Abhijit Paul; Salman Azhar; Phonindra Nath Das; Nandadulal Bairagi; Samrat Chatterjee (Comput. Biol. Medicine, 2022)

Ad Hoc Teamwork in the Presence of Adversaries. - Ted Fujimoto; Samrat Chatterjee; Auroop R. Ganguly (CoRR, 2022)

AdverSAR: Adversarial Search and Rescue via Multi-Agent Reinforcement Learning. - Aowabin Rahman; Arnab Bhattacharya 008; Thiagarajan Ramachandran; Sayak Mukherjee; Himanshu Sharma; Ted Fujimoto; Samrat Chatterjee (CoRR, 2022)

Autonomous Cyber Defense Against Dynamic Multi-strategy Infrastructural DDoS Attacks. - Ashutosh Dutta; Ehab Al-Shaer; Samrat Chatterjee; Qi Duan (CNS, 2023)

Extending Conformal Prediction to Hidden Markov Models with Exact Validity via de Finetti's Theorem for Markov Chains. - Buddhika Nettasinghe; Samrat Chatterjee; Ramakrishna Tipireddy; Mahantesh M. Halappanavar (ICML, 2023)

Accelerating Scientific Simulations with Bi-Fidelity Weighted Transfer Learning. - Katarzyna Borowiec; Dan Lu 001; Vikas Chandan; Samrat Chatterjee; Pradeep Ramuhalli; Ramakrishna Tipireddy; Mahantesh Halappanavar; Frank Liu 001 (ICMLA, 2023)

Deep Reinforcement Learning for Cyber System Defense under Dynamic Adversarial Uncertainties. - Ashutosh Dutta; Samrat Chatterjee; Arnab Bhattacharya 008; Mahantesh Halappanavar (CoRR, 2023)

konnect2prot: a web application to explore the protein properties in a functional protein-protein interaction network. - Shivam Kumar; Dipanka Sarmah; Shailendra Asthana; Samrat Chatterjee (Bioinform., 2023)

Quantitative analysis of the bioenergetics of Mycobacterium tuberculosis along with Glyoxylate cycle as a drug target under inhibition of enzymes using Petri net. - Sakshi Gupta; Sunita Kumawat; Zeeshan Fatima; Priya; Samrat Chatterjee (Comput. Biol. Chem., 2023)

Multi-level optimization with the koopman operator for data-driven, domain-aware, and dynamic system security. - Matthew R. Oster; Ethan King; Craig Bakker; Arnab Bhattacharya 008; Samrat Chatterjee; Feng Pan (Reliab. Eng. Syst. Saf., 2023)

Deep Multi-Agent Reinforcement Learning for Real-World Signalized Traffic Corridor Control. - Salman Shuvo; Sayak Mukherjee; Samrat Chatterjee; Sonja Glavaski; Draguna L. Vrabie; Geline Canayon; Matthew Juckes; Raimundo Rodulfo (ICMLA, 2024)

Exploration of functional relations among differentially co-expressed genes identifies regulators in glioblastoma. - Shivam Kumar; Dipanka Sarmah; Abhijit Paul; Samrat Chatterjee (Comput. Biol. Chem., 2024)

Assessing the Impact of Distribution Shift on Reinforcement Learning Performance. - Ted Fujimoto; Joshua Suetterlein; Samrat Chatterjee; Auroop R. Ganguly (CoRR, 2024)

Unmasking unlearnable models: a classification challenge for biomedical images without visible cues. - Shivam Kumar; Samrat Chatterjee (CoRR, 2024)

HistoSPACE: Histology-Inspired Spatial Transcriptome Prediction And Characterization Engine. - Shivam Kumar; Samrat Chatterjee (CoRR, 2024)

Parallel Algorithms for Median Consensus Clustering in Complex Networks. - Md Taufique Hussain; Mahantesh Halappanavar; Samrat Chatterjee; Filippo Radicchi; Santo Fortunato; Ariful Azad (CoRR, 2024)

A tri-level optimization model for interdependent infrastructure network resilience against compound hazard events. - Matthew R. Oster; Ilya Amburg; Samrat Chatterjee; Daniel A. Eisenberg; Dennis G. Thomas; Feng Pan; Auroop R. Ganguly (Int. J. Crit. Infrastructure Prot., 2024)

TCGAimmunosurv: An R package to identify genes associated with patient survival and immune cell state transitions using TCGA and single-cell RNA-seq data. - Devvrat Pandey; Shivam Kumar; Dipanka Sarmah; Samrat Chatterjee (Comput. Biol. Chem., 2025)