Improved Duplication-Transfer-Loss Reconciliation with Extinct and Unsampled Lineages. - Samson Weiner; Mukul S. Bansal (Algorithms, 2021)

DCCNV: Enhanced CNV Detection in Single-Cell Sequencing Using Diffusion Process and Contrastive Learning. - Mostafa Karami; Bingjun Li; Samson Weiner; Sahand Hamzehei; Sheida Nabavi (BCB, 2024)

Assessing the Potential of Gene Tree Parsimony for Microbial Phylogenomics. - Samson Weiner; Yutian Feng; J. Peter Gogarten; Mukul S. Bansal (RECOMB-CG, 2024)

Improved allele-specific single-cell copy number estimation in low-coverage DNA-sequencing. - Samson Weiner; Bingjun Li; Sheida Nabavi (Bioinform., 2024)