Principles that govern competition or co-existence in Rho-GTPase driven polarization. - Jian-Geng Chiou; Samuel A. Ramirez; Timothy C. Elston; Thomas P. Witelski; David G. Schaeffer; Daniel J. Lew (PLoS Comput. Biol., 2018)

Particle-based simulations of polarity establishment reveal stochastic promotion of Turing pattern formation. - Michael Pablo; Samuel A. Ramirez; Timothy C. Elston (PLoS Comput. Biol., 2018)

A novel stochastic simulation approach enables exploration of mechanisms for regulating polarity site movement. - Samuel A. Ramirez; Michael Pablo; Sean Burk; Daniel J. Lew; Timothy C. Elston (PLoS Comput. Biol., 2021)

Good machine learning practices: Learnings from the modern pharmaceutical discovery enterprise. - Vladimir Makarov; Christophe Chabbert; Elina Koletou; Fotis E. Psomopoulos; Natalja Kurbatova; Samuel A. Ramirez; Chas Nelson; Prashant Natarajan; Bikalpa Neupane (Comput. Biol. Medicine, 2024)