An integrative Bayesian Dirichlet-multinomial regression model for the analysis of taxonomic abundances in microbiome data. - W. Duncan Wadsworth; Raffaele Argiento; Michele Guindani; Jessica Galloway-Pena; Samuel A. Shelburne; Marina Vannucci (BMC Bioinform., 2017)

VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning. - Jiwoong Kim; David E. Greenberg; Reed Pifer; Shuang Jiang; Guanghua Xiao; Samuel A. Shelburne; Andrew Y. Koh; Yang Xie; Xiaowei Zhan (PLoS Comput. Biol., 2020)