Évolution de la virulence des parasites : apports des modèles emboîtés. (Parasite virulence evolution : insights from embedded models). - Samuel Alizon (2006)

The Evolutionary Dynamics of a Rapidly Mutating Virus within and between Hosts: The Case of Hepatitis C Virus. - Fabio Luciani; Samuel Alizon (PLoS Comput. Biol., 2009)

Dynamics and evolution of infectious diseases. (Dynamique et évolution des maladies infectieuses). - Samuel Alizon (2013)

Epidemic Spread on Weighted Networks. - Christel Kamp; Mathieu Moslonka-Lefebvre; Samuel Alizon (PLoS Comput. Biol., 2013)

Within-Host Stochastic Emergence Dynamics of Immune-Escape Mutants. - Matthew Hartfield; Samuel Alizon (PLoS Comput. Biol., 2015)

Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study. - Emma Saulnier; Olivier Gascuel; Samuel Alizon (PLoS Comput. Biol., 2017)

Epithelial stratification shapes infection dynamics. - Carmen Lía Murall; Robert Jackson; Ingeborg Zehbe; Nathalie Boulle; Michel Segondy; Samuel Alizon (PLoS Comput. Biol., 2019)

Episome partitioning and symmetric cell divisions: Quantifying the role of random events in the persistence of HPV infections. - Thomas Beneteau; Christian Selinger; Mircea-Traian Sofonea; Samuel Alizon (PLoS Comput. Biol., 2021)

Age-structured non-pharmaceutical interventions for optimal control of COVID-19 epidemic. - Quentin Richard; Samuel Alizon; Marc Choisy; Mircea-Traian Sofonea; Ramsès Djidjou-Demasse (PLoS Comput. Biol., 2021)

Reconstructing contact network structure and cross-immunity patterns from multiple infection histories. - Christian Selinger; Samuel Alizon (PLoS Comput. Biol., 2021)

Real-time forecasting of COVID-19-related hospital strain in France using a non-Markovian mechanistic model. - Alexander Massey; Corentin Boennec; Claudia Ximena Restrepo-Ortiz; Christophe Blanchet; Samuel Alizon; Mircea Sofonea (PLoS Comput. Biol., 2024)