Assessing equivalent and inverse change in genes between diverse experiments. - Lisa Neums; Devin C. Koestler; Qing Xia; Jinxiang Hu; Shachi Patel; Shelby Bell-Glenn; Dong Pei; Bo Zhang; Samuel Boyd; Prabhakar Chalise; Jeffrey A. Thompson (Frontiers Bioinform., 2022)

AMEND: active module identification using experimental data and network diffusion. - Samuel Boyd; Chad Slawson; Jeffrey A. Thompson (BMC Bioinform., 2023)

AMEND 2.0: module identification and multi-omic data integration with multiplex-heterogeneous graphs. - Samuel Boyd; Chad Slawson; Jeffrey A. Thompson (BMC Bioinform., 2025)