Magnetic resonance image reconstruction using the annihilating filter method. - Samuel Deslauriers-Gauthier; Pina Marziliano (ISBI, 2011)

Spherical finite rate of innovation theory for the recovery of fiber orientations. - Samuel Deslauriers-Gauthier; Pina Marziliano (EMBC, 2012)

Sampling Signals With a Finite Rate of Innovation on the Sphere. - Samuel Deslauriers-Gauthier; Pina Marziliano (IEEE Trans. Signal Process., 2013)

Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use? - Lipeng Ning; Frederik B. Laun; Yaniv Gur; Edward V. R. DiBella; Samuel Deslauriers-Gauthier; Thinhinane Megherbi; Aurobrata Ghosh; Mauro Zucchelli; Gloria Menegaz; Rutger Fick; Samuel St-Jean; Michael Paquette; et al. (Medical Image Anal., 2015)

The application of a new sampling theorem for non-bandlimited signals on the sphere: Improving the recovery of crossing fibers for low b-value acquisitions. - Samuel Deslauriers-Gauthier; Pina Marziliano; Michael Paquette; Maxime Descoteaux (Medical Image Anal., 2016)

Inference and Visualization of Information Flow in the Visual Pathway Using dMRI and EEG. - Samuel Deslauriers-Gauthier; Jean-Marc Lina; Russell Butler; Pierre-Michel Bernier; Kevin Whittingstall; Rachid Deriche; Maxime Descoteaux (MICCAI (1), 2017)

Edema-Informed Anatomically Constrained Particle Filter Tractography. - Samuel Deslauriers-Gauthier; Drew Parker; François Rheault; Rachid Deriche; Steven Brem; Maxime Descoteaux; Ragini Verma (MICCAI (3), 2018)

Solving the Cross-Subject Parcel Matching Problem Using Optimal Transport. - Guillermo Gallardo; Nathalie T. H. Gayraud; Rachid Deriche; Maureen Clerc; Samuel Deslauriers-Gauthier; Demian Wassermann (MICCAI (1), 2018)

Analytical Fiber ODF Reconstruction in 3D Polarized Light Imaging: Performance Assessment. - Abib Alimi; Samuel Deslauriers-Gauthier; Felix Matuschke; Daniel Schmitz; Markus Axer; Rachid Deriche (ISBI, 2019)

Estimation of axonal conduction speed and the inter hemispheric transfer time using connectivity informed maximum entropy on the mean. - Samuel Deslauriers-Gauthier; Rachid Deriche (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

White matter information flow mapping from diffusion MRI and EEG. - Samuel Deslauriers-Gauthier; Jean-Marc Lina; Russell Butler; Kevin Whittingstall; Guillaume Gilbert; Pierre-Michel Bernier; Rachid Deriche; Maxime Descoteaux (NeuroImage, 2019)

Multi Tissue Modelling of Diffusion MRI Signal Reveals Volume Fraction Bias. - Matteo Frigo; Rutger Henri Jacques Fick; Mauro Zucchelli; Samuel Deslauriers-Gauthier; Rachid Deriche (ISBI, 2020)

Analytical and fast Fiber Orientation Distribution reconstruction in 3D-Polarized Light Imaging. - Abib Alimi; Samuel Deslauriers-Gauthier; Felix Matuschke; Andreas Müller 022; Sascha E. A. Muenzing; Markus Axer; Rachid Deriche (Medical Image Anal., 2020)

A unified framework for multimodal structure-function mapping based on eigenmodes. - Samuel Deslauriers-Gauthier; Mauro Zucchelli; Matteo Frigo; Rachid Deriche (Medical Image Anal., 2020)

A computational Framework for generating rotation invariant features and its application in diffusion MRI. - Mauro Zucchelli; Samuel Deslauriers-Gauthier; Rachid Deriche (Medical Image Anal., 2020)

Incorporating Transmission Delays Supported By Diffusion Mri In Meg Source Reconstruction. - Ivana Kojcic; Théodore Papadopoulo; Rachid Deriche; Samuel Deslauriers-Gauthier (ISBI, 2021)

Investigating The Effect Of Dmri Signal Representation On Fully-Connected Neural Networks Brain Tissue Microstructure Estimation. - Mauro Zucchelli; Samuel Deslauriers-Gauthier; Rachid Deriche (ISBI, 2021)

Structure-Function Mapping via Graph Neural Networks. - Yang Ji; Samuel Deslauriers-Gauthier; Rachid Deriche (MLCN@MICCAI, 2021)

A Spherical Convolutional Neural Network for White Matter Structure Imaging via dMRI. - Sara Sedlar; Abib Alimi; Théodore Papadopoulo; Rachid Deriche; Samuel Deslauriers-Gauthier (MICCAI (3), 2021)

Brain Tissue Microstructure Characterization Using dMRI Based Autoencoder Neural-Networks. - Mauro Zucchelli; Samuel Deslauriers-Gauthier; Rachid Deriche (CDMRI@MICCAI, 2021)

On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: Chronicles of the MEMENTO challenge. - Alberto De Luca; Andrada Ianus; Alexander Leemans; Marco Palombo; Noam Shemesh; Hui Zhang 005; Daniel C. Alexander; Markus Nilsson; Martijn Froeling; Geert Jan Biessels; Mauro Zucchelli; Matteo Frigo; et al. (NeuroImage, 2021)

CNN and diffusion MRI’s 4th degree rotational invariants for Alzheimer’s disease identification. - Aymene Mohammed Bouayed; Samuel Deslauriers-Gauthier; Mauro Zucchelli; Rachid Deriche (LIDTA, 2022)

Human Biophysics as Network Weights: Conditional Generative Models for Ultra-fast Simulation. - Shihan Ma; Alexander Kenneth Clarke; Kostiantyn Maksymenko; Samuel Deslauriers-Gauthier; Xinjun Sheng; Xiangyang Zhu; Dario Farina (CoRR, 2022)

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. - Gabriel Girard; Jonathan Rafael-Patino; Raphaël Truffet; Dogu Baran Aydogan; Nagesh Adluru; Veena A. Nair; Vivek Prabhakaran; Barbara B. Bendlin; Andrew L. Alexander; Sara Bosticardo; Ilaria Gabusi; Mario Ocampo-Pineda; et al. (NeuroImage, 2023)

CNN Explainability with Multivector Tucker Saliency Maps for Self-Supervised Models. - Aymene Mohammed Bouayed; Samuel Deslauriers-Gauthier; Adrian Iaccovelli; David Naccache (CoRR, 2024)

NeuroMotion: Open-source platform with neuromechanical and deep network modules to generate surface EMG signals during voluntary movement. - Shihan Ma; Irene Mendez Guerra; Arnault H. Caillet; Jiamin Zhao; Alexander Kenneth Clarke; Kostiantyn Maksymenko; Samuel Deslauriers-Gauthier; Xinjun Sheng; Xiangyang Zhu; Dario Farina (PLoS Comput. Biol., 2024)

Brain Network Alignment Using Structural and Functional Connectivity With Anatomical Constraints. - Yanis Aeschlimann; Anna Calissano; Théo Papadopoulo; Samuel Deslauriers-Gauthier (ISBI, 2025)

CNN Interpretability with Multivector Tucker Saliency Maps for Self-Supervised Models. - Aymene Mohammed Bouayed; Samuel Deslauriers-Gauthier; Adrian Iacovelli; David Naccache (Trans. Mach. Learn. Res., 2025)

Conditional Generative Models for Simulation of EMG During Naturalistic Movements. - Shihan Ma; Alexander Kenneth Clarke; Kostiantyn Maksymenko; Samuel Deslauriers-Gauthier; Xinjun Sheng; Xiangyang Zhu; Dario Farina (IEEE Trans. Neural Networks Learn. Syst., 2025)