Robust non-linear dimensionality reduction using successive 1-dimensional Laplacian Eigenmaps. - Samuel Gerber; Tolga Tasdizen; Ross T. Whitaker (ICML, 2007)

Variational shape detection in microscope images based on joint shape and image feature statistics. - Matthias Fuchs; Samuel Gerber (CVPR Workshops, 2008)

Dimensionality reduction and principal surfaces via Kernel Map Manifolds. - Samuel Gerber; Tolga Tasdizen; Ross T. Whitaker (ICCV, 2009)

A Variational Image-Based Approach to the Correction of Susceptibility Artifacts in the Alignment of Diffusion Weighted and Structural MRI. - Ran Tao 011; P. Thomas Fletcher; Samuel Gerber; Ross T. Whitaker (IPMI, 2009)

On the Manifold Structure of the Space of Brain Images. - Samuel Gerber; Tolga Tasdizen; Sarang C. Joshi; Ross T. Whitaker (MICCAI (1), 2009)

Learning Multiple Tasks using Manifold Regularization. - Arvind Agarwal; Hal Daumé III; Samuel Gerber (NIPS, 2010)

Manifold modeling for brain population analysis. - Samuel Gerber; Tolga Tasdizen; P. Thomas Fletcher; Sarang C. Joshi; Ross T. Whitaker (Medical Image Anal., 2010)

Visual Exploration of High Dimensional Scalar Functions. - Samuel Gerber; Peer-Timo Bremer; Valerio Pascucci; Ross T. Whitaker (IEEE Trans. Vis. Comput. Graph., 2010)

Fast Shape-Based Nearest-Neighbor Search for Brain MRIs Using Hierarchical Feature Matching. - Peihong Zhu; Suyash P. Awate; Samuel Gerber; Ross T. Whitaker (MICCAI (2), 2011)

Nonparametric Models for High-Dimensional Data Analysis. - Samuel Gerber (2012)

Visualization of Uncertainty without a Mean. - Kristin C. Potter; Samuel Gerber; Erik W. Anderson (IEEE Computer Graphics and Applications, 2013)

Regularization-free principal curve estimation. - Samuel Gerber; Ross T. Whitaker (J. Mach. Learn. Res., 2013)

Automatic Estimation of the Optic Nerve Sheath Diameter from Ultrasound Images. - Samuel Gerber; Maeliss Jallais; Thomas Hastings Greer; Matt McCormick 001; Sean Montgomery; Bradley Freeman; Deborah Shipley Kane; Deepak Roy Chittajallu; Neal Siekierski; Stephen R. Aylward (BIVPCS/POCUS@MICCAI, 2017)

Ultrasound Augmentation: Rapid 3-D Scanning for Tracking and On-Body Display. - Maeliss Jallais; Thomas Hastings Greer; Samuel Gerber; Matt McCormick 001; Deepak Roy Chittajallu; Neal Siekierski; Stephen R. Aylward (BIVPCS/POCUS@MICCAI, 2017)

Multiscale Strategies for Computing Optimal Transport. - Samuel Gerber; Mauro Maggioni (J. Mach. Learn. Res., 2017)

Vectorized persistent homology representations for characterizing glandular architecture in histology images. - Deepak Roy Chittajallu; Neal Siekierski; Sanghoon Lee 007; Samuel Gerber; Jonathan D. Beezley; David Manthey; David A. Gutman; Lee Cooper 001 (ISBI, 2018)

Scoliosis screening and monitoring using self contained ultrasound and neural networks. - Thomas Hastings Greer; Samuel Gerber; Marc Niethammer; Roland Kwitt; Matt McCormick 001; Deepak Roy Chittajallu; Neal Siekierski; Matthew Oetgen; Kevin Cleary; Stephen R. Aylward (ISBI, 2018)

Exploratory Population Analysis with Unbalanced Optimal Transport. - Samuel Gerber; Marc Niethammer; Martin Styner; Stephen R. Aylward (MICCAI (3), 2018)

Intramodality Domain Adaptation Using Self Ensembling and Adversarial Training. - Zahil Shanis; Samuel Gerber; Mingchen Gao; Andinet Enquobahrie (DART/MIL3ID@MICCAI, 2019)

Active Learning Technique for Multimodal Brain Tumor Segmentation Using Limited Labeled Images. - Dhruv Sharma; Zahil Shanis; Chandan K. Reddy; Samuel Gerber; Andinet Enquobahrie (DART/MIL3ID@MICCAI, 2019)

Image-Based Methods for Phase Estimation, Gating, and Temporal Superresolution of Cardiac Ultrasound. - Deepak Roy Chittajallu; Matthew McCormick 001; Samuel Gerber; Tomasz J. Czernuszewicz; Ryan C. Gessner; Monte S. Willis; Marc Niethammer; Roland Kwitt; Stephen R. Aylward (IEEE Trans. Biomed. Eng., 2019)

Adversarial Data Augmentation via Deformation Statistics. - Sahin Olut; Zhengyang Shen; Zhenlin Xu; Samuel Gerber; Marc Niethammer (ECCV (29), 2020)

Spatial Component Analysis to Mitigate Multiple Testing in Voxel-Based Analysis. - Samuel Gerber; Marc Niethammer (MICCAI (7), 2020)

Saddlepoints in Unsupervised Least Squares. - Samuel Gerber (CoRR, 2021)

Thin shell demons for dental scan registration. - Pranjal Sahu; Samuel Gerber; Qingyu Zhao; Tung Nguyen; Matt McCormick 001; Beatriz Paniagua; Jared Vicory (Image Processing, 2022)

NousNav: A low-cost neuronavigation system for deployment in lower-resource settings. - Étienne Léger; Samantha Horvath; Jean-Christophe Fillion-Robin; David Allemang; Samuel Gerber; Parikshit Juvekar; Erickson Torio; Tina Kapur; Steve Pieper 001; Sonia Pujol; Ryan S. Bardsley; Sarah F. Frisken; et al. (Int. J. Comput. Assist. Radiol. Surg., 2022)

Optimal transport features for morphometric population analysis. - Samuel Gerber; Marc Niethammer; Ebrahim Ebrahim; Joseph Piven; Stephen R. Dager; Martin Styner; Stephen R. Aylward; Andinet Enquobahrie (Medical Image Anal., 2023)