Incorporating antigen processing into CD4+ T cell epitope prediction with integer linear programming. - Avik Bhattacharya; Molly C. Lyons; Samuel J. Landry; Ramgopal R. Mettu (BCB, 2022)

Parallel Computation of Conformational Stability for CD4+ T-cell Epitope Prediction. - Avik Bhattacharya; James O. Wrabl; Samuel J. Landry; Ramgopal R. Mettu (BIBM, 2023)

GPU Acceleration for Markov Chain Monte Carlo Sampling. - Jiarui Li; Samuel J. Landry; Ramgopal R. Mettu (AIMLSystems, 2024)

GPU Acceleration of Conformational Stability Computation for CD4+ T-cell Epitope Prediction. - Jiarui Li; Samuel J. Landry; Ramgopal R. Mettu (BIBM, 2024)

Quantifying Cross-Attention Interaction in Transformers for Interpreting TCR-pMHC Binding. - Jiarui Li; Zixiang Yin; Haley Smith; Zhengming Ding; Samuel J. Landry; Ramgopal R. Mettu (CoRR, 2025)