MDMap: A system for data-driven layout and exploration of molecular dynamics simulations. - Robert Patro; Cheuk Yiu Ip; Sujal Bista; D. Thirumalai; Samuel S. Cho; Amitabh Varshney (BioVis, 2011)

Parallel verlet neighbor list algorithm for GPU-optimized MD simulations. - Tyson J. Lipscomb; Anqi Zou; Samuel S. Cho (BCB, 2012)

GPU-Optimized Hybrid Neighbor/Cell List Algorithm for Coarse-Grained MD Simulations of Protein and RNA Folding and Assembly. - Andrew J. Proctor; Cody A. Stevens; Samuel S. Cho (BCB, 2013)

Engaging Non-Traditional Students in Computer Science through Socially-Inspired Learning and Sustained Mentoring. - Jennifer Burg; Victor Paúl Pauca; William H. Turkett Jr.; Errin W. Fulp; Samuel S. Cho; Peter Santago; Daniel A. Cañas; H. Donald Gage (SIGCSE, 2015)