Training Conditional Random Fields for Maximum Labelwise Accuracy. - Samuel S. Gross; Olga Russakovsky; Chuong B. Do; Serafim Batzoglou (NIPS, 2006)

CONTRAlign: Discriminative Training for Protein Sequence Alignment. - Chuong B. Do; Samuel S. Gross; Serafim Batzoglou (RECOMB, 2006)

Using Multiple Alignments to Improve Gene Prediction. - Samuel S. Gross; Michael R. Brent (J. Comput. Biol., 2006)

Computational recognition of protein-coding genes using multiple genomic alignments. - Samuel S. Gross (2010)

Automated cellular annotation for high-resolution images of adult Caenorhabditis elegans. - Sarah J. Aerni; Xiao Liu; Chuong B. Do; Samuel S. Gross; Andy Nguyen; Stephen D. Guo; Fuhui Long; Hanchuan Peng; Stuart S. Kim; Serafim Batzoglou (Bioinform., 2013)

Special Numbers in the Ring Zn. - Samuel S. Gross; Joshua Harrington (J. Integer Seq., 2015)