Rosetta: MSF: a modular framework for multi-state computational protein design. - Patrick Löffler; Samuel Schmitz; Enrico Hupfeld; Reinhard Sterner; Rainer Merkl (PLoS Comput. Biol., 2017)

PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST. - Cinque S. Soto; Jessica A. Finn; Jordan R. Willis; Samuel B. Day; Robert S. Sinkovits; Taylor Jones; Samuel Schmitz; Jens Meiler; Andre Branchizio; James E. Crowe Jr. (BMC Bioinform., 2020)

Rosetta design with co-evolutionary information retains protein function. - Samuel Schmitz; Moritz Ertelt; Rainer Merkl; Jens Meiler (PLoS Comput. Biol., 2021)