SATPdb: a database of structurally annotated therapeutic peptides. - Sandeep Singh; Kumardeep Chaudhary; Sandeep Kumar Dhanda; Sherry Bhalla; Salman Sadullah Usmani; Ankur Gautam; Abhishek Tuknait; Piyush Agrawal; Deepika Mathur; Gajendra P. S. Raghava (Nucleic Acids Res., 2016)

Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics. - Sandeep Kumar Dhanda; Salman Sadullah Usmani; Piyush Agrawal; Gandharva Nagpal; Ankur Gautam; Gajendra P. S. Raghava (Briefings Bioinform., 2017)

ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins. - Sandeep Kumar Dhanda; Randi Vita; Brendan Ha; Alba Grifoni; Bjoern Peters; Alessandro Sette (Bioinform., 2018)

IEDB-AR: immune epitope database - analysis resource in 2019. - Sandeep Kumar Dhanda; Swapnil Mahajan; Sinu Paul; Zhen Yan; Haeuk Kim; Martin Closter Jespersen; Vanessa Isabell Jurtz; Massimo Andreatta; Jason A. Greenbaum; Paolo Marcatili; Alessandro Sette; Morten Nielsen 001; et al. (Nucleic Acids Res., 2019)

The Immune Epitope Database (IEDB): 2018 update. - Randi Vita; Swapnil Mahajan; James A. Overton; Sandeep Kumar Dhanda; Sheridan Martini; Jason R. Cantrell; Daniel K. Wheeler; Alessandro Sette; Bjoern Peters (Nucleic Acids Res., 2019)

Not all T cell epitopes are equally desired: a review of in silico tools for the prediction of cytokine-inducing potential of T-cell epitopes. - Sandeep Kumar Dhanda; Jitendra Malviya; Sudheer Gupta (Briefings Bioinform., 2022)

Editorial: Recent advances in peptide informatics: challenges and opportunities. - Rahul Kumar; Kumardeep Chaudhary; Sandeep Kumar Dhanda (Frontiers Bioinform., 2023)