CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations. - Sandeep Patel; Charles L. Brooks III (J. Comput. Chem., 2004)

CHARMM fluctuating charge force field for proteins: II Protein/solvent properties from molecular dynamics simulations using a nonadditive electrostatic model. - Sandeep Patel; Alexander D. MacKerell Jr.; Charles L. Brooks III (J. Comput. Chem., 2004)

Thermodynamic and structural properties of methanol-water solutions using nonadditive interaction models. - Yang Zhong; G. Lee Warren; Sandeep Patel (J. Comput. Chem., 2008)

Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors. - Joseph E. Davis; Adnan Ozsoy; Sandeep Patel; Michela Taufer (BICoB, 2009)

Improving numerical reproducibility and stability in large-scale numerical simulations on GPUs. - Michela Taufer; Omar Padron; Philip Saponaro; Sandeep Patel (IPDPS, 2010)

FENZI: GPU-Enabled Molecular Dynamics Simulations of Large Membrane Regions Based on the CHARMM Force Field and PME. - Narayan Ganesan; Michela Taufer; Brad A. Bauer; Sandeep Patel (IPDPS Workshops, 2011)

Molecular dynamics simulations of aqueous ions at the liquid-vapor interface accelerated using graphics processors. - Brad A. Bauer; Joseph E. Davis; Michela Taufer; Sandeep Patel (J. Comput. Chem., 2011)

Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs). - Narayan Ganesan; Brad A. Bauer; Timothy R. Lucas; Sandeep Patel; Michela Taufer (J. Comput. Chem., 2011)

Solvation properties of N-acetyl-β-glucosamine: Molecular dynamics study incorporating electrostatic polarization. - Yang Zhong; Brad A. Bauer; Sandeep Patel (J. Comput. Chem., 2011)

Molecular dynamics simulation of hydrated DPPC monolayers using charge equilibration force fields. - Timothy R. Lucas; Brad A. Bauer; Joseph E. Davis; Sandeep Patel (J. Comput. Chem., 2012)

Efficient SDS Simulations on Multi-GPU Nodes of XSEDE High-End Clusters. - Samuel Schlachter; Stephen Herbein; Michela Taufer; Shuching Ou; Sandeep Patel; Jeremy S. Logan (e-Science, 2013)

Performance Dissection of a Molecular Dynamics Code across CUDA and GPU Generations. - Matthew Wezowicz; Trilce Estrada; Sandeep Patel; Michela Taufer (IPDPS Workshops, 2013)

GPU-Enabled Macromolecular Simulation: Challenges and Opportunities. - Michela Taufer; Narayan Ganesan; Sandeep Patel (Comput. Sci. Eng., 2013)

Binding structures of tri-N-acetyl-β-glucosamine in hen egg white lysozyme using molecular dynamics with a polarizable force field. - Yang Zhong; Sandeep Patel (J. Comput. Chem., 2013)

Pursuing Coordinated Trajectory Progression and Efficient Resource Utilization of GPU-Enabled Molecular Dynamics Simulations. - Samuel Schlachter; Stephen Herbein; Shuching Ou; Jeremy S. Logan; Sandeep Patel; Michela Taufer (IEEE Des. Test, 2014)

Design and analysis of matrix Wiener synthesis filter for multirate filter bank. - Sandeep Patel; Ravindra Dhuli; Brejesh Lall (Signal Process., 2014)

Free energetics of carbon nanotube association in aqueous inorganic NaI salt solutions: Temperature effects using all-atom molecular dynamics simulations. - Shuching Ou; Di Cui; Matthew Wezowicz; Michela Taufer; Sandeep Patel (J. Comput. Chem., 2015)

A charge equilibration formalism for treating charge transfer effects in MD simulations: Application to water clusters. - Sudipta Kumar Sinha; Mohit Mehta; Sandeep Patel (J. Comput. Chem., 2017)

Analysis of Signals via Non-Maximally Decimated Non-Uniform Filter Banks. - Sandeep Patel; Ravindra Dhuli; Brejesh Lall (IEEE Trans. Circuits Syst. I Regul. Pap., 2019)

Measures for the Degree of Time Variance: Application to Filter Banks. - Ayan Kumar Dutta; Shiv Dutt Joshi; Sandeep Patel; Brejesh Lall (IEEE Access, 2022)

Reconstruction of a signal from multirate observations: A recursive approach. - Sandeep Patel; Ravindra Dhuli; Brejesh Lall (Signal Process., 2023)

Understanding determinants of GenAI usage and its effect on SCM performance using dynamic capability view. - Hemlata Gangwar; Mohammad Shameem; Sandeep Patel; Alex Koohang; Anuj Sharma (Ind. Manag. Data Syst., 2025)