Robust Peak Detection and Alignment of nanoLC-FT Mass Spectrometry Data. - Marius C. Codrea; Connie R. Jimenez; Sander R. Piersma; Jaap Heringa; Elena Marchiori (EvoBIO, 2007)

On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics. - Thang V. Pham; Sander R. Piersma; Marc Warmoes; Connie R. Jimenez (Bioinform., 2010)

DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery. - Tiansheng Zhu; Yi Zhu; Yue Xuan; Huanhuan Gao; Xue Cai; Sander R. Piersma; Thang Viet Pham; Tim Schelfhorst; Richard R. G. D. Haas; Irene V. Bijnsdorp; Rui Sun; Liang Yue; et al. (Genom. Proteom. Bioinform., 2020)

DPHL v.2: An updated and comprehensive DIA pan-human assay library for quantifying more than 14,000 proteins. - Zhangzhi Xue; Tiansheng Zhu; Fangfei Zhang; Cheng Zhang; Nan Xiang; Liujia Qian; Xiao Yi; Yaoting Sun; Wei Liu; Xue Cai; Linyan Wang; Xizhe Dai; et al. (Patterns, 2023)