A Comparative Study of Various Meta-Heuristic Algorithms for Ab Initio Protein Structure Prediction on 2D Hydrophobic-Polar Model. - Sandhya Parasnath Dubey; S. Balaji 003; N. Gopalakrishna Kini; M. Sathish Kumar (SocProS (2), 2015)

Protein structure prediction on 2D square HP lattice with revised fitness function. - Sandhya Parasnath Dubey; N. Gopalakrishna Kini; S. Balaji 003; M. Sathish Kumar (ICACCI, 2017)

GPU Computing for Compute-Intensive Scientific Calculation. - Sandhya Parasnath Dubey; M. Sathish Kumar; S. Balaji 003 (SocProS (2), 2018)

A Novel Framework for Ab Initio Coarse Protein Structure Prediction. - Sandhya Parasnath Dubey; S. Balaji 003; N. Gopalakrishna Kini; M. Sathish Kumar (Adv. Bioinformatics, 2018)

Machine learning based predictive model for the analysis of sequence activity relationships using protein spectra and protein descriptors. - Adam Mckenna; Sandhya Parasnath Dubey (J. Biomed. Informatics, 2022)

DCBLSTM - Deep Convolutional Bidirectional Long Short-Term Memory neural network for Q8 secondary protein structure prediction. - Suvidhi Banthia; Adam Mckenna; Shailendra Kumar Tiwari; Sandhya Parasnath Dubey (Comput. Biol. Medicine, 2025)