CEBS object model for systems biology data, SysBio-OM. - Sandhya Xirasagar; Scott F. Gustafson; B. Alex Merrick; Kenneth B. Tomer; Stanley Stasiewicz; Denny D. Chan; Kenneth J. Yost III; John R. Yates III; Susan Sumner; Nianqing Xiao; Michael D. Waters (Bioinform., 2004)

Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application. - Sandhya Xirasagar; Scott F. Gustafson; Cheng-Cheng Huang; Qinyan Pan; Jennifer Fostel; Paul Boyer; B. Alex Merrick; Kenneth B. Tomer; Denny D. Chan; Kenneth J. Yost III; Danielle Choi; Nianqing Xiao; et al. (Bioinform., 2006)

CEBS - Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data. - Michael D. Waters; Stanley Stasiewicz; B. Alex Merrick; Kenneth B. Tomer; Pierre R. Bushel; Richard S. Paules; Nancy Stegman; Gerald Nehls; Kenneth J. Yost III; C. Harris Johnson; Scott F. Gustafson; Sandhya Xirasagar; et al. (Nucleic Acids Res., 2008)

The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis. - Koenraad Van Doorslaer; Qina Tan; Sandhya Xirasagar; Sandya Bandaru; Vivek Gopalan; Yasmin Mohamoud; Yentram Huyen; Alison A. McBride (Nucleic Acids Res., 2013)

The Papillomavirus Episteme: a major update to the papillomavirus sequence database. - Koenraad Van Doorslaer; Zhiwen Li; Sandhya Xirasagar; Piet Maes; David Kaminsky; David Liou; Qiang Sun; Ramandeep Kaur; Yentram Huyen; Alison A. McBride (Nucleic Acids Res., 2017)

Balancing Confidentiality and Sharing of Genomic and Phenotypic Data in a Clinical Research System. - Daniel Veltri; Zhiwen Li; Sandhya Xirasagar; Andrew J. Oler; Xi Cheng; Ke Huang; Jason Barnett; Lingwen Zhang; Octavio Juarez Espinosa; Yongjie Fan; Morgan Similuk; Magdalena Walkiewicz; et al. (BCB, 2018)

PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. - Ling Luo 001; Shankai Yan; Po-Ting Lai; Daniel Veltri; Andrew J. Oler; Sandhya Xirasagar; Rajarshi Ghosh; Morgan Similuk; Peter N. Robinson; Zhiyong Lu (Bioinform., 2021)

ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes Using Short Read Data. - Michael Ford; Ananth Hari; Oscar Rodriguez; Junyan Xu; Justin Lack; Cihan Oguz; Yu Zhang; Sarah Weber; Mary Magliocco; Jason Barnett; Sandhya Xirasagar; Smilee Samuel; et al. (RECOMB, 2022)

PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. - Shankai Yan; Ling Luo 001; Po-Ting Lai; Daniel Veltri; Andrew J. Oler; Sandhya Xirasagar; Rajarshi Ghosh; Morgan Similuk; Peter N. Robinson; Zhiyong Lu (J. Biomed. Informatics, 2022)