Predicting potential domain homologies from FASTA search results. - Hedvig Hegyi; Sándor Pongor (Comput. Appl. Biosci., 1993)

The SBASE protein domain library, release 2.0: a collection of annotated protein sequence segments. - Sándor Pongor; Vesna Skerl; Miklós Cserzo; Zsolt Hátsági; György J. Simon; Valeria Bevilacqua (Nucleic Acids Res., 1993)

Protein Motifs: Towards a Unified View on Databases. - Zsolt Hátsági; Vesna Skerl; Sándor Pongor (HICSS (5), 1994)

The SBASE protein domain library, Release 4.0: a collection of annotated protein sequence segments. - János Murvai; Andrei E. Gabrielian; Péter Fábián; Zsolt Hátsági; Kirill Degtyarenko; Hedvig Hegyi; Sándor Pongor (Nucleic Acids Res., 1996)

The SBASE protein domain library, release 5.0: a collection of annotated protein sequence segments. - Péter Fábián; János Murvai; Zsolt Hátsági; Kristian Vlahovicek; Hedvig Hegyi; Sándor Pongor (Nucleic Acids Res., 1997)

The domain-server: direct prediction of protein domain-homologies from BLAST search. - János Murvai; Kristian Vlahovicek; Endre Barta; Subbiah Parthasarathy; Hedvig Hegyi; Friedhelm Pfeiffer; Sándor Pongor (Bioinform., 1999)

The SBASE protein domain library, release 6.0: a collection of annotated protein sequence segments. - János Murvai; Kristian Vlahovicek; Endre Barta; Csaba Szepesvári; Cristina Acatrinei; Sándor Pongor (Nucleic Acids Res., 1999)

A simple probabilistic scoring method for protein domain identification. - János Murvai; Kristian Vlahovicek; Sándor Pongor (Bioinform., 2000)

model.it : building three dimensional DNA models from sequence data. - Kristian Vlahovicek; Sándor Pongor (Bioinform., 2000)

The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments. - János Murvai; Kristian Vlahovicek; Endre Barta; Bruno Cataletto; Sándor Pongor (Nucleic Acids Res., 2000)

The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments. - János Murvai; Kristian Vlahovicek; Endre Barta; Sándor Pongor (Nucleic Acids Res., 2001)

CX, an algorithm that identifies protruding atoms in proteins. - Alessandro Pintar; Oliviero Carugo; Sándor Pongor (Bioinform., 2002)

The SBASE protein domain library, release 9.0: an online resource for protein domain identification. - Kristian Vlahovicek; János Murvai; Endre Barta; Sándor Pongor (Nucleic Acids Res., 2002)

IS: a web-site for intron statistics. - Endre Barta; László Kaján; Sándor Pongor (Bioinform., 2003)

DPX: for the analysis of the protein core. - Alessandro Pintar; Oliviero Carugo; Sándor Pongor (Bioinform., 2003)

The SBASE domain sequence library, release 10: domain architecture prediction. - Kristian Vlahovicek; László Kaján; János Murvai; Zoltán Hegeds; Sándor Pongor (Nucleic Acids Res., 2003)

DNA analysis servers: plot.it, bend.it, model.it and IS. - Kristian Vlahovicek; László Kaján; Sándor Pongor (Nucleic Acids Res., 2003)

Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm. - Zoltán Gáspári; Kristian Vlahovicek; Sándor Pongor (Bioinform., 2005)

Graph-representation of oxidative folding pathways. - Vilmos Ágoston; Masa Cemazar; László Kaján; Sándor Pongor (BMC Bioinform., 2005)

The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines. - Kristian Vlahovicek; László Kaján; Vilmos Ágoston; Sándor Pongor (Nucleic Acids Res., 2005)

CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures. - Kristian Vlahovicek; Alessandro Pintar; Laavanya Parthasarathi; Oliviero Carugo; Sándor Pongor (Nucleic Acids Res., 2005)

Application of a simple likelihood ratio approximant to protein sequence classification. - László Kaján; Attila Kertész-Farkas; Dino Franklin; Neli Ivanova; András Kocsor; Sándor Pongor (Bioinform., 2006)

Application of compression-based distance measures to protein sequence classification: a methodological study. - András Kocsor; Attila Kertész-Farkas; László Kaján; Sándor Pongor (Bioinform., 2006)

Equivalence Learning in Protein Classification. - Attila Kertész-Farkas; András Kocsor; Sándor Pongor (MLDM, 2007)

A Protein Classification Benchmark collection for machine learning. - Paolo Sonego; Mircea Pacurar; Somdutta Dhir; Attila Kertész-Farkas; András Kocsor; Zoltán Gáspári; Jack A. M. Leunissen; Sándor Pongor (Nucleic Acids Res., 2007)

Analysis of Kernel Based Protein Classification Strategies Using Pairwise Sequence Alignment Measures. - Dino Franklin; Somdutta Dhir; Sándor Pongor (CIBB, 2008)

ROC analysis: applications to the classification of biological sequences and 3D structures. - Paolo Sonego; András Kocsor; Sándor Pongor (Briefings Bioinform., 2008)

Fast protein fold estimation from NMR-derived distance restraints. - Annamária F. Ángyán; András Perczel; Sándor Pongor; Zoltán Gáspári (Bioinform., 2008)

Tree-Based Algorithms for Protein Classification. - Róbert Busa-Fekete; András Kocsor; Sándor Pongor (Computational Intelligence in Bioinformatics, 2008)

ProGMap: an integrated annotation resource for protein orthology. - Arnold Kuzniar; Ke Lin; Ying He; Harm Nijveen; Sándor Pongor; Jack A. M. Leunissen (Nucleic Acids Res., 2009)

PTMSearch: A Greedy Tree Traversal Algorithm for Finding Protein Post-Translational Modifications in Tandem Mass Spectra. - Attila Kertész-Farkas; Beáta Reiz; Michael P. Myers; Sándor Pongor (ECML/PKDD (2), 2011)

Psychologically Inspired, Rule-Based Outlier Detection in Noisy Data. - Beáta Reiz; Sándor Pongor (SYNASC, 2011)

Simulation of communication and cooperation in multispecies bacterial communities with an agent based model. - Dora Bihary; Adam Kerenyi; Zsolt Gelencsér; Sergiu Netotea; Attila Kertész-Farkas; Vittorio Venturi; Sándor Pongor (Scalable Comput. Pract. Exp., 2012)

Classifying the Topology of AHL-Driven Quorum Sensing Circuits in Proteobacterial Genomes. - Zsolt Gelencsér; Kumari Sonal Choudhary; Bruna Goncalves Coutinho; Sanjarbek Hudaiberdiev; Borisz Galbáts; Vittorio Venturi; Sándor Pongor (Sensors, 2012)

Predicting effective drug combinations via network propagation. - Balázs Ligeti; Roberto Vera; Gergely Lukács; Balazs Györffy; Sándor Pongor (BioCAS, 2013)

Obituary: In memory of Jack Leunissen. - Jingchu Luo; Harm Nijveen; Teresa K. Attwood; David Phillip Judge; Sándor Pongor; David Landsman; Martin J. Bishop 002 (Briefings Bioinform., 2013)

JBioWH: an open-source Java framework for bioinformatics data integration. - Roberto Vera; Yasset Pérez-Riverol; Sonia Pérez; Balázs Ligeti; Attila Kertész-Farkas; Sándor Pongor (Database J. Biol. Databases Curation, 2013)

Chemical rule-based filtering of MS/MS spectra. - Beáta Reiz; Attila Kertész-Farkas; Sándor Pongor; Michael P. Myers (Bioinform., 2013)

How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health. - Vladimir A. Kuznetsov; Hwee Kuan Lee; Sebastian Maurer-Stroh; Maria Judit Molnár; Sándor Pongor; Birgit Eisenhaber; Frank Eisenhaber (Health Inf. Sci. Syst., 2013)

PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra. - Attila Kertész-Farkas; Beáta Reiz; Roberto Vera; Michael P. Myers; Sándor Pongor (Bioinform., 2014)

Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks. - Arnold Kuzniar; Somdutta Dhir; Harm Nijveen; Sándor Pongor; Jack A. M. Leunissen (Bioinform., 2015)

A snapshot of 3649 Web-based services published between 1994 and 2017 shows a decrease in availability after 2 years. - Ágnes Osz; Lorinc Sándor Pongor; Danuta Szirmai; Balazs Györffy (Briefings Bioinform., 2019)

TPMCalculator: one-step software to quantify mRNA abundance of genomic features. - Roberto Vera Alvarez; Lorinc Sándor Pongor; Leonardo Mariño-Ramírez; David Landsman (Bioinform., 2019)

COVIDOUTCOME - estimating COVID severity based on mutation signatures in the SARS-CoV-2 genome. - Ádám Nagy; Balázs Ligeti; János Szebeni; Sándor Pongor; Balazs Györffy (Database J. Biol. Databases Curation, 2021)

Microsimulation based quantitative analysis of COVID-19 management strategies. - István Z. Reguly; Dávid Csercsik; János Juhász; Kálmán Tornai; Zsófia Bujtár; Gergely Horváth; Bence Keömley-Horváth; Tamás Kós; György Cserey; Kristóf Iván; Sándor Pongor; Gábor Szederkényi; et al. (PLoS Comput. Biol., 2022)