MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. - Tomás Pluskal; Sandra Castillo; Alejandro Villar-Briones; Matej Oresic (BMC Bioinform., 2010)

Principal metabolic flux mode analysis. - Sahely Bhadra; Peter Blomberg; Sandra Castillo; Juho Rousu (Bioinform., 2018)

Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. - Jakob P. Pettersen; Sandra Castillo; Paula Jouhten; Eivind Almaas (BMC Bioinform., 2023)