AA2UA: Converting all-atom models into their united atom coarse grained counterparts for use in LAMMPS. - Eli I. Assaf; Xueyan Liu 014; Sandra Erkens (Softw. Impacts, 2024)

SMI2PDB: A self-contained Python tool to generate atomistic systems of organic molecules using their SMILES notations. - Eli I. Assaf; Xueyan Liu 014; Peng Lin; Sandra Erkens (Softw. Impacts, 2024)

PDB2DAT: Automating LAMMPS data file generation from PDB molecular systems using Python, Rdkit, and Pysimm. - Eli I. Assaf; Xueyan Liu 014; Peng Lin; Sandra Erkens (Softw. Impacts, 2024)

A causal discovery approach to study key mixed traffic-related factors and age of highway affecting raveling. - Zili Wang; Panchamy Krishnakumari; Kumar Anupam; Hans van Lint; Sandra Erkens (Comput. Aided Civ. Infrastructure Eng., 2024)

Scymol: A python-based software package for initializing and running molecular dynamics simulations using LAMMPS. - Eli I. Assaf; Elsa Maalouf; Xueyan Liu 014; Peng Lin; Sandra Erkens (SoftwareX, 2025)

Gradient boosting decision trees to study laboratory and field performance in pavement management. - Mohammadjavad Berangi; Bernardo Mota Lontra; Kumar Anupam; Sandra Erkens; Dave Van Vliet; Almar Snippe; Mahesh Moenielal (Comput. Aided Civ. Infrastructure Eng., 2025)