NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides. - Bruce R. Southey; Andinet Amare; Tyler A. Zimmerman; Sandra L. Rodriguez-Zas; Jonathan V. Sweedler (Nucleic Acids Res., 2006)

Inference of Gene Pathways Using Gaussian Mixture Models. - Younhee Ko; Chengxiang Zhai; Sandra L. Rodriguez-Zas (BIBM, 2007)

Smoothing Spline Mixed Effects Modeling of Multifactorial Gene Expression Profiles. - Brandon J. Smith; Bruce R. Southey; Sandra L. Rodriguez-Zas (BIBM, 2007)

Enhanced Prediction of Cleavage in Bovine Precursor Sequences. - Allison N. Tegge; Sandra L. Rodriguez-Zas; Jonathan V. Sweedler; Bruce R. Southey (ISBRA, 2007)

Prediction of neuropeptide cleavage sites in insects. - Bruce R. Southey; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (Bioinform., 2008)

A Python analytical pipeline to identify prohormone precursors and predict prohormone cleavage sites. - Bruce R. Southey; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (Frontiers Neuroinformatics, 2008)

Inference of gene pathways using mixture Bayesian networks. - Younhee Ko; ChengXiang Zhai; Sandra L. Rodriguez-Zas (BMC Syst. Biol., 2009)

Discovery of gene network variability across samples representing multiple classes. - Younhee Ko; ChengXiang Zhai; Sandra L. Rodriguez-Zas (Int. J. Bioinform. Res. Appl., 2010)

Comparison of tandem mass spectrometry search methods to identify neuropeptides. - Malik N. Akhtar; Bruce R. Southey; Kenneth I. Porter; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Integration of statistical models and visualization tools to characterize microRNA networks influencing cancer. - Kristin R. Delfino; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Model of ion intensity from tandem mass spectra for improved peptide identification and simulation. - Zeeshan Fazal; Bruce R. Southey; Ahmed Sadeque; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Integration of statistical models and visualization tools to characterize microRNA networks influencing cancer. - James Karnia; Kristin R. Delfino; Maria B. Villamil; Gustavo Caetano-Anollés; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Integration of sequence and functional information to identify and annotate neuropeptides in the pig genome. - Kenneth I. Porter; Bruce R. Southey; Malik N. Akhtar; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Hierarchical modeling of alternative exon usage associations with survival. - Ahmed Sadeque; Nicola V. L. Serao; Bruce R. Southey; Zeeshan Fazal; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Integration of polygenic and individual SNP effects in genome-wide association analyses. - Nicola V. L. Serao; Jonathan E. Beever; D. B. Faulkner; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Additive and multiplicative genome-wide association models identify genes associated with growth. - Cynthia Zavala; Nicola V. L. Serao; Maria B. Villamil; Gustavo Caetano-Anollés; Sandra L. Rodriguez-Zas (BIBM Workshops, 2011)

Identification of best indicators of peptide-spectrum match using a permutation resampling approach. - Malik N. Akhtar; Bruce R. Southey; Per E. Andrén; Jonathan V. Sweedler; Sandra L. Rodriguez-Zas (J. Bioinform. Comput. Biol., 2014)

Analytical workflow profiling gene expression in murine macrophages. - Scott E. Nixon; Dianelys González-Peña; Marcus A. Lawson; Robert H. McCusker; Alvaro G. Hernandez; Jason C. O'Connor; Robert Dantzer; Keith W. Kelley; Sandra L. Rodriguez-Zas (J. Bioinform. Comput. Biol., 2015)